Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g3152 ATGGAGCCGGACGAGCATCGTCAACACGACGAGCATGAAGTGTACGGAGGAGAGATCCCCGACGAGGGAGAGATGGACACAGATTTTAGGGTCGAAGAAGAAGAAGAAGAAGAAGGACCAGGAGACCACCATGGCCCCAATAACCCCAACAAGGACTTGGAGGACATGAAGAAGAGGCTCAAGGAGATTGAGGAAGAAGCTGGCGCTCTTCGCGAAATGCATGCTAAGGTTGAGAAAGAGATGGGCGTTGTTCAAGATTCATCTGGTTCTTCTGCAAGCCAAGCTGAAAAGGAAGAAGTGGATTCTCGATCAATCTATGTTGGTAATGTTGACTATGCATGTACACCCGAAGAAGTCCAACAGCATTTTCAGTCCTGTGGAACTGTGAACAGAGTGACAATATTGACAGACAAGTTTGGTCAACCAAAAGGGTTTGCTTATGTTGAGTTTGTTGAGATTGATGCTGTTCAGAATGCTCTTCTGTTGAACGAATCAGAATTACATGGTCGACAGTTGAAGGTCTCTGCAAAGCGTACAAACGTTCCTGGAATGAAACAGTTTCGTGGAAGAAGGCCTATACGATCTAGAAGGCCCTACATGCCTGCTCCATTTTATCCTCCATATGGTTATGGAAGGGTTCCGAGGTTTAGGCGACCCACACGGTACAGGCCATACTAG 678 0.469 MEPDEHRQHDEHEVYGGEIPDEGEMDTDFRVEEEEEEEGPGDHHGPNNPNKDLEDMKKRLKEIEEEAGALREMHAKVEKEMGVVQDSSGSSASQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQFRGRRPIRSRRPYMPAPFYPPYGYGRVPRFRRPTRYRPY 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g3152 225 SMART rrm1_1 104 175 IPR000504 GO:0003723
Bisa03g3152 225 MobiDBLite consensus disorder prediction 1 61 - -
Bisa03g3152 225 MobiDBLite consensus disorder prediction 82 101 - -
Bisa03g3152 225 MobiDBLite consensus disorder prediction 1 19 - -
Bisa03g3152 225 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 179 IPR000504 GO:0003723
Bisa03g3152 225 Gene3D - 29 176 IPR012677 -
Bisa03g3152 225 CDD RRM_II_PABPs 104 175 - -
Bisa03g3152 225 FunFam Polyadenylate-binding protein 1 97 183 - -
Bisa03g3152 225 Coils Coil 53 80 - -
Bisa03g3152 225 MobiDBLite consensus disorder prediction 40 61 - -
Bisa03g3152 225 SUPERFAMILY RNA-binding domain, RBD 93 199 IPR035979 GO:0003676
Bisa03g3152 225 MobiDBLite consensus disorder prediction 20 39 - -
Bisa03g3152 225 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 22 197 - -
Bisa03g3152 225 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 173 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g3152 Bisa-ChrBisa03 54711003 54724267 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g3152 104 175 Eukaryotic Initiation Factors Gene Family AT2G36660 38.158 8.49e-10 56.2