Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g3138 ATGGAGTCAACTAATTCATATGGGAGATCACAATGTCATGGGTCCCACTTAATCATGCCAAAGGTGCCTGAGTACATTTCCTCCAGAAATATAATGGGCGATGACCTGTGTTCAGGAAAACTTAGATGGTCAGCAGCTGAAAAGCCATCCGCCTCATTTCCAGCGTGTGAAAAAGACTTTCCAGGTGAAGATGTGAAGGTAAATCTGAAACGTCGTAGGGTGGAGGAAGTATTGAACACATATAGGGAACTATCTTCCAAACTTTTGCATAAATATGAGGCCGATGAACAAGGACACATGGCCAATGTAAGAAGAAAAGTACGGATGGAGGTAGCCATGTATCTCAAGAAGCAACACAAATGGGTCAACACTTGGAAACAGCTAGGGCCAATCCCAGGAATTGAATTACGTGATAAGTTTCAGTGCAGGGCTGAACTGAAAATTATTGGTCTTCATTGTCAATTTGCAAGTGGTATTGATTACATGAAGAAGGATGGAGTATTGTTAGCCACAAGCATTGTAGAGTCTAAGCGCTATGCCAATGTTCGAAAGTCAAGTAATTCCTTGACTTATATAGGCCAAGGAGGAAATCCGAGGGTTAAGCGTATAAAGCCAACAGATCAGAAACTAACACAAGGAAATCTTGCTATGATGAATAGCATGGAAGCTAAAAGTCCTGTGAGAGTGATTTTGAAGCCTCCAACTTCTATTTGTCTAAGAAAGATGATCCATAACCATAAGCCAAAAAGTTGTGTAGTAGCTCAAAGAGAGGTTGTTTGCTCTAATGACATCTCACAAGGACAAGAAAAGGTTCCTATTCGTGTGGTTACATCTATTAATCATGATGATTTGAAGCCTTCCCCATTTGATTACATAGTCAATAATGTTTACCCAGAGGGGTATGTGCATCCTGAGGCTATTCCTAACGGTTGTGATTTTATTGATGGATTTATGAACAATGAGAAATGTGCATGTGCTTTGAAAAATGGTGGAAGATTGCCTTATGATTGTAGTAGGAAACTTACTGATCAAACAAACTCGCTTATTTGTGAGTGTGGTCCTTCTTTTAAGTGCTCCTCTTCTTGCACCAACAGGGTAACTCAATTTGGGATTCAATTCCAACTAGAAATATTCAGAACCGAAATGAAGGGTTGGGGTGTTAGAACACGTTCTTTTATCCCTTCTGGAAGTTTTGTTTGTGAGTTTGTTGGAGAAATTTGCCTTGATAGAGAAGCTATTTCAGGGATGGATGCTGACCAATATTCATTTAATCTAGGTGTGGGCAAGGGCTTCATTGATGCAACAAAACGTGGTAATGTTGGAAGATTTATAAATCATAGCTGTTCTCCTAATCTGTGTGTCAAAGATGTTTTGTATGATCACGATGATCAGAGATTTCCCCGCAAAATGCTGTTTGCTTTGAAGAGCATACCTTCTGGGCGAGAACTGTATTATGACTACAATTGCATGAGGGGAAATTCTAATGCAGATAGTAGTAGCAAGGTATGGAGTAATACTTGCCATTGTGGTTCAGCTCAATGCATTGGAAAGATTTACATTTGA 1563 0.3973 MESTNSYGRSQCHGSHLIMPKVPEYISSRNIMGDDLCSGKLRWSAAEKPSASFPACEKDFPGEDVKVNLKRRRVEEVLNTYRELSSKLLHKYEADEQGHMANVRRKVRMEVAMYLKKQHKWVNTWKQLGPIPGIELRDKFQCRAELKIIGLHCQFASGIDYMKKDGVLLATSIVESKRYANVRKSSNSLTYIGQGGNPRVKRIKPTDQKLTQGNLAMMNSMEAKSPVRVILKPPTSICLRKMIHNHKPKSCVVAQREVVCSNDISQGQEKVPIRVVTSINHDDLKPSPFDYIVNNVYPEGYVHPEAIPNGCDFIDGFMNNEKCACALKNGGRLPYDCSRKLTDQTNSLICECGPSFKCSSSCTNRVTQFGIQFQLEIFRTEMKGWGVRTRSFIPSGSFVCEFVGEICLDREAISGMDADQYSFNLGVGKGFIDATKRGNVGRFINHSCSPNLCVKDVLYDHDDQRFPRKMLFALKSIPSGRELYYDYNCMRGNSNADSSSKVWSNTCHCGSAQCIGKIYI 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g3138 520 Pfam Pre-SET motif 264 365 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Bisa03g3138 520 ProSiteProfiles YDG domain profile. 129 277 IPR003105 -
Bisa03g3138 520 ProSiteProfiles SET domain profile. 373 488 IPR001214 GO:0005515
Bisa03g3138 520 SMART G9a_1 124 268 IPR003105 -
Bisa03g3138 520 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 70 512 - -
Bisa03g3138 520 SMART set_7 373 494 IPR001214 GO:0005515
Bisa03g3138 520 Pfam SAD/SRA domain 128 238 IPR003105 -
Bisa03g3138 520 ProSiteProfiles Pre-SET domain profile. 309 370 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Bisa03g3138 520 Pfam SET domain 384 488 IPR001214 GO:0005515
Bisa03g3138 520 Gene3D - 110 247 IPR036987 -
Bisa03g3138 520 SMART preset_2 261 359 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Bisa03g3138 520 SUPERFAMILY SET domain 253 489 IPR046341 -
Bisa03g3138 520 SUPERFAMILY PUA domain-like 111 230 IPR015947 -
Bisa03g3138 520 Gene3D SET domain 252 519 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g3138 Bisa-ChrBisa03 54258688 54261621 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g3138 74 518 Su(var)3-9 homologs AT5G04940 29.478 7.19e-56 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Bisa03g3138 SAD_SRA 2.8e-26 CL0178