Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g3135 ATGGCTTCATCGTGTGTTTCGTTCTTGTTCATGGCTATGTCTCTTCATGCCATGGCTGTCAAGGCCATTGATGGAAATTGGTATGATGCTCGTGCCACATTCTATGGTGACATGGGAGGTCGAGAAACGATGCAGGGTGCTTGTGGCTATGGCAATCTTTTTAAGCAAGGCTACGGCCTCGAGACGGCGGCCCTAAGCACGGCTCTCTTCAACAACGGCCTCACCTGCGGTGCCTGTTTTGAGCTTATGTGCGTCAACGACCCTCAATGGTGCATCAAAGGTGCTGGGACCGTCAAGATCACTGCCACAAACTTTTGCCCGCCCAACCATGACCAACCCGACATAAACCATTGGTGTAACCCACCCCAAAAGCACTTTGATCTCTCCATGGCTATGTTCGTCAAGCTTGCCAATTACAAGGCCGGCGTCATCCCGGTGCGCTACCGCCGGGTCCTGTGCACCAAGACCGGCGGGGTCAAGTTCGAGCTCAAGGGAAACCCTAATTGGCTGCTTGTCTTGTTCTACAACGTCGGTAATGCCGGCGATGTGACGAATGCTAAGATCAAAGGGTCTAATGGTGGGTGGATTCAAATGACTAGAAACTGGGGTCAAAATTGGCAAACTGGGACTAATTTAGTAGGGCAAAGTTTGTCATTTCAAGTGACAACTAGTGATGGGAAAATGTTACAGTTTGACAATATTGTGCCTTCTAATTGGCAATTTGGTCAAACATTTGAGGGCAAACAAAACTTTTAG 756 0.4907 MASSCVSFLFMAMSLHAMAVKAIDGNWYDARATFYGDMGGRETMQGACGYGNLFKQGYGLETAALSTALFNNGLTCGACFELMCVNDPQWCIKGAGTVKITATNFCPPNHDQPDINHWCNPPQKHFDLSMAMFVKLANYKAGVIPVRYRRVLCTKTGGVKFELKGNPNWLLVLFYNVGNAGDVTNAKIKGSNGGWIQMTRNWGQNWQTGTNLVGQSLSFQVTTSDGKMLQFDNIVPSNWQFGQTFEGKQNF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g3135 251 PANTHER EXPANSIN-A15 6 249 IPR002963 GO:0009664
Bisa03g3135 251 SUPERFAMILY Barwin-like endoglucanases 26 176 IPR036908 -
Bisa03g3135 251 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Bisa03g3135 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Bisa03g3135 251 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Bisa03g3135 251 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Bisa03g3135 251 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Bisa03g3135 251 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Bisa03g3135 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 247 IPR007117 -
Bisa03g3135 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 158 IPR007112 -
Bisa03g3135 251 Gene3D - 12 154 IPR036908 -
Bisa03g3135 251 SMART dpbb_1 62 148 IPR007112 -
Bisa03g3135 251 CDD DPBB_EXPA_N 27 153 - -
Bisa03g3135 251 Pfam Lytic transglycolase 62 148 IPR009009 -
Bisa03g3135 251 PRINTS Expansin signature 233 249 IPR002963 GO:0009664
Bisa03g3135 251 PRINTS Expansin signature 204 225 IPR002963 GO:0009664
Bisa03g3135 251 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Bisa03g3135 251 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Bisa03g3135 251 PRINTS Expansin signature 133 146 IPR002963 GO:0009664
Bisa03g3135 251 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Bisa03g3135 251 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Bisa03g3135 251 PRINTS Expansin signature 157 169 IPR002963 GO:0009664
Bisa03g3135 251 PRINTS Expansin signature 169 190 IPR002963 GO:0009664
Bisa03g3135 251 SUPERFAMILY PHL pollen allergen 155 247 IPR036749 -
Bisa03g3135 251 Gene3D - 157 251 IPR036749 -
Bisa03g3135 251 Pfam Expansin C-terminal domain 159 236 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g3135 Bisa-ChrBisa03 54034022 54035804 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g3135 23 251 Expansin Gene Family AT5G39280 67.686 4.62e-119 339