Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g3043 ATGGCGATCTTCGATCCAAAGAGCGGATTCAATGCCGCTTCCAGGACATTCCACAGCCTCAGACCCGCCGTTCATCTTCCTCCTCCTGACACACCTATCTCAGCAGCACTCTACGCTCTCTCTCTCCGTCGCAACTCGCCCTGGTCTGACTCAGTCACCGCCATCATTGACTCCGCCACCGGCCAACGAGTTTCCTTCTCTGAGTTCACCCATTCCTCACAAACATTAGCCTCAAATCTCAAATCTCTCGTAGGCCTCTCCAAAGGCGACACAGCTTTCGTGTTATCCCCCAACCAAATTAATATCCCGATCCTCTACTTCGCGTTACTCTCTCTCGGTGTGGTCGTCTCTCCGGCCAACCCAATCAGCACACGCGCCGAAATTTCCCGCCTCTTCGATCTATCCTCACCGGCCATTGCCTTTGCCACGTCATCCACCGCTCACAAACTCCCCAAAAAACTCCGTCTCGGAGTCGTACTCCTTGACTCGCCAGAGTTCGATTCGCTGATGAGGGAGACGGCGACGAGAAGTAAAAACGGCGTCGCAGAGAGCGTCGCCGCACCCGCTGATTTGAGTCAATCCGATTTGGCGGCGATTTTGTACTCGTCGGGGACCACGGGGAAGGTGAAGGGGGTGATGCTGACTCACCGGAACCTGATAGCGGTGGCGGCGGGTTACGATGCGGGTCGTCCTCAGAGAGAGAGGCCGTCGATTTGCATCCATACGATTCCGTATTTTCATGTGTACGGGTTCACGTACAGCATTAGGTCGGTGGTGTTGTCGGAGACGGTGGTGCTGATGGAGAGGTTTGAGGTAAGGAAGATGCTGAGGGCTGTGGAGGAGTTCGGAGTGACTCATCTGGCGGTAGTGCCGCCGATGGTGGTGGCGATGGCGAAAGAAGCTGTAACGGACGGCTATGATTTGAGCTCGTTGGAAGTCATAACTTGTGGGGGTGCTCCGATTGGAAACGGCACCGTCGCGGCCTTCAAGTCTAAGTTCCCCAAAGTATCATTCGTTCAGGGCTATGGGCTAACCGAATCAACAGCATCAACTTGCCGAACAATAGGACCAGAGGAGACTAATCGAGTAGGAACAACGGGTAAGCTAATAGCAGGAGTCGAAGCCAAAATTGTAGACCCGAAGACAGGACTAGCCATGTCTCCTTGTGAGCAAGGAGAACTCTGGCTCAGAGGGTCTTCCATAATGAAAGGCTACGTTGGAGACCCGGAAGCAACTTCAGCAACCCTGGTGAATGGGTGGTTGAGGACTGGTGACTTATGCTATTTTGACAATGAAGGTTTCCTCTACGTCGTCGACAGATTGAAGGAATTGATCAAATACAAGGGATATCAGGTGGCCCCTGCGGAACTGGAAAACTTGCTACAATCCCACCCACAGATCAAGGACGCCGCAGTTATACCTTACCCAGACGAAGAAGCTGGACAGGTGCCCATGGCTTTTGTGGTAAGACAACCCCAAAGTTCTCTTAACGAGGCGGACGTTATGGATTTTGTTGCCAAACAGGTTGCACCATACAAGAAAATAAGACGCGTAAGACTTATAGATTCCATACCAAAAAATGCAGCAGGAAAAATATTGAGGAAGGACTTAAATAAAGTTGCCCTTCAAGAATCTTTATCTAAATTATAA 1650 0.5145 MAIFDPKSGFNAASRTFHSLRPAVHLPPPDTPISAALYALSLRRNSPWSDSVTAIIDSATGQRVSFSEFTHSSQTLASNLKSLVGLSKGDTAFVLSPNQINIPILYFALLSLGVVVSPANPISTRAEISRLFDLSSPAIAFATSSTAHKLPKKLRLGVVLLDSPEFDSLMRETATRSKNGVAESVAAPADLSQSDLAAILYSSGTTGKVKGVMLTHRNLIAVAAGYDAGRPQRERPSICIHTIPYFHVYGFTYSIRSVVLSETVVLMERFEVRKMLRAVEEFGVTHLAVVPPMVVAMAKEAVTDGYDLSSLEVITCGGAPIGNGTVAAFKSKFPKVSFVQGYGLTESTASTCRTIGPEETNRVGTTGKLIAGVEAKIVDPKTGLAMSPCEQGELWLRGSSIMKGYVGDPEATSATLVNGWLRTGDLCYFDNEGFLYVVDRLKELIKYKGYQVAPAELENLLQSHPQIKDAAVIPYPDEEAGQVPMAFVVRQPQSSLNEADVMDFVAKQVAPYKKIRRVRLIDSIPKNAAGKILRKDLNKVALQESLSKL 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g3043 549 Gene3D - 443 546 IPR045851 -
Bisa03g3043 549 Pfam AMP-binding enzyme C-terminal domain 456 531 IPR025110 -
Bisa03g3043 549 ProSitePatterns Putative AMP-binding domain signature. 199 210 IPR020845 -
Bisa03g3043 549 CDD 4CL 27 537 - -
Bisa03g3043 549 FunFam 4-coumarate--CoA ligase 2 443 544 - -
Bisa03g3043 549 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 12 539 - -
Bisa03g3043 549 SUPERFAMILY Acetyl-CoA synthetase-like 49 544 - -
Bisa03g3043 549 Gene3D - 24 442 IPR042099 -
Bisa03g3043 549 Pfam AMP-binding enzyme 53 447 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g3043 Bisa-ChrBisa03 51354989 51361976 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g3043 3 549 Monolignol Biosynthesis Gene Families AT5G63380 50.626 0.0 555