Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g2991 ATGAAACCCATCCAAAACAAGAAAACTCGCCAGGCAACATTCGAGAGGAGGAAGAAAGGTTTAATGAAGAAAGCTTCAGAATTATCCACACTCTGCGGAATCAATGTGTGTCTGATAATCTACCCTCCTCAGTCTGAACAAGGCGAGCCAGAGACATGGCCTAAGGACCGACGAGAAGTAATTCACAACATCGAAAAGTACAACGACAAGAAGAAATCTCAGAAGAAATCCAAGAAGTCCTATGATCTTCACGAGTTCTTTAAAGATAGGAAGACCCAGATTCAGAGTGAGACTTCCAAGGTTCAAGAACAGAGGCTGAGGATGTCGTATCCGACATGGGATGAAAGTTTCGATAACCTGGAAGAGGAGAAGCTGAGGATGCTGATCGGTTCGTTGGATTCTAAGATTGAAGAGTGTAATCAGAGGATTGAGTTTATGAAGATGGAAAAGGCAAAAGAATCAGATATTGTCCCTGTAATTCCAACGAACTCTGGGACGGGTTCGATGCTGCACATGTTTCAAGGCAACCTTTTCACTCATCCTATAATGTCACTTGTCGATTCATATCCTCTTCAGTCTCAGATGCTGCCCTTTGTTTATGATTATGGTCCAAATTTTCAAGTGTGTTATGATAACATTGGAGGGGTTCAATCAGTGATGCAGCCATTTCATGAGTTTATCTATGACCCTGCTTACAGTATTGCTTTTGAGGATTTGATATGCGATGAAGTAGTTTTTCAGAATGGATTTAAGACAGAAGGGTACTGTGATTCTGTTCATGCTTCATTATAG 792 0.4129 MKPIQNKKTRQATFERRKKGLMKKASELSTLCGINVCLIIYPPQSEQGEPETWPKDRREVIHNIEKYNDKKKSQKKSKKSYDLHEFFKDRKTQIQSETSKVQEQRLRMSYPTWDESFDNLEEEKLRMLIGSLDSKIEECNQRIEFMKMEKAKESDIVPVIPTNSGTGSMLHMFQGNLFTHPIMSLVDSYPLQSQMLPFVYDYGPNFQVCYDNIGGVQSVMQPFHEFIYDPAYSIAFEDLICDEVVFQNGFKTEGYCDSVHASL 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g2991 263 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 148 - -
Bisa03g2991 263 Gene3D - 6 104 IPR036879 GO:0003677|GO:0046983
Bisa03g2991 263 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 53 IPR002100 GO:0003677|GO:0046983
Bisa03g2991 263 SUPERFAMILY SRF-like 1 86 IPR036879 GO:0003677|GO:0046983
Bisa03g2991 263 ProSiteProfiles MADS-box domain profile. 1 41 IPR002100 GO:0003677|GO:0046983
Bisa03g2991 263 PRINTS MADS domain signature 16 31 IPR002100 GO:0003677|GO:0046983
Bisa03g2991 263 PRINTS MADS domain signature 31 52 IPR002100 GO:0003677|GO:0046983
Bisa03g2991 263 CDD MADS_SRF_like 1 54 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bisa03g2991 263 SMART madsneu2 1 55 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g2991 Bisa-ChrBisa03 49676798 49677589 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g2991 1 142 Type I MADS-box Gene Family AT5G55690 37.415 2.69e-23 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bisa03g2991 SRF-TF 5e-20 No_clan