Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g2988 ATGAAACCCATCCAAAACAAGAAAACTCGCAAGGCAACATTCATGAGGAGGAAGAAAGGTTTAAGGAAGAAAGCTTCAGAACTATCCACACTGTGCGAAATCAATGTCTGTCTGATAATCTACCCTCCTCAATCCGAACAAGGCGTGCCAGAGACATGGCCTAAAGGCCAACGAGAAGTAATTCGCAACATCGAAAAGTACAATGACAAGAAGAAATCCCAGAAGAAATCCAAGAAGTCCTATGATCTCTACGAGTTCTTTAAGGATAGGAAGGCCCAGATTCAGAGTGAGACTTTCAAGGTTCGAGAACAGAGGCTGAGGATGTCGTATCCGACATGGGATGAAAGTTTCGACAACCTCGGAGAGAAGTTGAGGATGTTGATCGGTTCGTTGGATTCTAAGATTGAAGAGTGTAATCAGAGGATTGAGTTTATGAAGATGGAAAAGACAAAGGAATCAGAGATTGTCCCTGTAATTCCAACGAACTCTGGGACGGGTTTGATGCAGCACATGTCTCAAGGCAACCTTTTCACTCATCCTATGATGCCACTTGGTGATTCATATCCTCTTTAG 573 0.4328 MKPIQNKKTRKATFMRRKKGLRKKASELSTLCEINVCLIIYPPQSEQGVPETWPKGQREVIRNIEKYNDKKKSQKKSKKSYDLYEFFKDRKAQIQSETFKVREQRLRMSYPTWDESFDNLGEKLRMLIGSLDSKIEECNQRIEFMKMEKTKESEIVPVIPTNSGTGLMQHMSQGNLFTHPMMPLGDSYPL 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g2988 190 CDD MADS_SRF_like 1 63 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bisa03g2988 190 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 147 - -
Bisa03g2988 190 SMART madsneu2 1 55 IPR002100 GO:0003677|GO:0046983
Bisa03g2988 190 Gene3D - 6 93 IPR036879 GO:0003677|GO:0046983
Bisa03g2988 190 ProSiteProfiles MADS-box domain profile. 1 41 IPR002100 GO:0003677|GO:0046983
Bisa03g2988 190 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 52 IPR002100 GO:0003677|GO:0046983
Bisa03g2988 190 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g2988 Bisa-ChrBisa03 49648363 49648935 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g2988 1 141 Type I MADS-box Gene Family AT5G55690 33.562 7.25e-18 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bisa03g2988 SRF-TF 2.1e-17 No_clan