Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g2901 ATGCAGGCAAATTTGTCACCCAATCCACCCTCTTTTCCAGATTTCGGTTTGCAGAATAATCAACAGAGATGGGAAGATGCTGCTATTTCAGATTATGGTGTCAGAGTTGGGGCACCGTTTAAAGAATTCAACCAAGCCTCTGGAACCCAGTCTTCGGTTCTGCCAAGTGACTCCAATGGGATTAAGATCCCCAATCAAGAAAATTGTCTGATGGGTGACACATTGCGAACTAGTAAACTCCAAGATTGGGATCCCACTGTAATGTTGAACAATCTTTCTTTTCTGGAAGAAAAAATTCATCAGCTCCAGGATCTTGTGCATTTGATTGTTGGTCAGAAGGGGCAGCCATTTGGACCATCCGATGAACTTGTAACTCAGGAAAAGCAGCTTGTCACAGCTGATCTGACATCAATTATTGTTCAGTTGATCTCTACAGCAGGTAGTCTTCTTCCTTCTGCTAGGCATACTCTTACAAACACTAGTCCACAGATTCCTGGGACTACCTTTCCTTCTGGATTAGATCCAAGTGGTATTCCACCACAACAGAATATGGGAGATAAAGTATCTGATCAATCCAACCAGATTGATCTAACTAATATTTGCGAAATGGAACAAAACTGCCATATGGAAGAACATGAATCAAAAGATGAAGAGGATGTGGACGAGGGTGAGAACCTTCCTCCGGGCTCCTACGAGATTTTGCAGTTAGAAAAAGAAGAAATCCTTGCTCCTCATACACATTTCTGTACGATATGTGGAAAGGGATTCAAAAGAGATGCAAATCTTCGGATGCATATGAGAGGCCATGGTGATGAGTACAAAACACCGGAAGCGCTTGCAAAACCTAATAAAGAATCTGTGTCTGAACCCAAGCTCGTCAAGAGGTATTCCTGCCCCAATGTTGGCTGTAAGCGTAATAAAGAGCACAAGAAGTTTCAACCTCTGAAGACTATTTTATGTGTGAAAAACCATTACAAAAGAACACACTGTGACAAGAGTTACATTTGCAGCAGATGCAACGCCAAGAAATTTTCTGTCATGGCAGATCTTAAAACTCATGAAAAGCACTGTGGTAAGGATAAATGGCTTTGTTCATGTGGCACTACATTTTCAAGGAAGGACAAGCTTTTTGGACATATTGCGCTTTTCCAAGGCCATACTCCAGCGATACCCTTGGATGACTCGAGAGTACCAATTGGGCTAGTTGATCAGGAAAGCAACGAAGACAGTGACAAGGTAGGAAGTATAAACTTTAGCTTTGGATCTGGTGGAAATGGAGTTGAAAACGTTATGGATATCAAAGGTATTGATGATCCTATCAATTATCTCACATCATTGAACTTTGAAACCTCGAACTTTGGTGTATTTAATGAATTCCCTCGACCCCCATTTGAAGATTCAGAGGGTTCGTTCTCTTTTTTCATCCCCGAATCTTTCAATTATGATCCGAAATCTGGAGGAGAATCCTGTTCTAAAAATCTGTTGTGA 1488 0.4133 MQANLSPNPPSFPDFGLQNNQQRWEDAAISDYGVRVGAPFKEFNQASGTQSSVLPSDSNGIKIPNQENCLMGDTLRTSKLQDWDPTVMLNNLSFLEEKIHQLQDLVHLIVGQKGQPFGPSDELVTQEKQLVTADLTSIIVQLISTAGSLLPSARHTLTNTSPQIPGTTFPSGLDPSGIPPQQNMGDKVSDQSNQIDLTNICEMEQNCHMEEHESKDEEDVDEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPEALAKPNKESVSEPKLVKRYSCPNVGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSYICSRCNAKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDSRVPIGLVDQESNEDSDKVGSINFSFGSGGNGVENVMDIKGIDDPINYLTSLNFETSNFGVFNEFPRPPFEDSEGSFSFFIPESFNYDPKSGGESCSKNLL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g2901 495 ProSiteProfiles Zinc finger C2H2 type domain profile. 247 274 IPR013087 -
Bisa03g2901 495 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 67 412 IPR044300 GO:0010044|GO:0010447
Bisa03g2901 495 Gene3D Classic Zinc Finger 231 302 - -
Bisa03g2901 495 ProSitePatterns Zinc finger C2H2 type domain signature. 249 269 IPR013087 -
Bisa03g2901 495 SUPERFAMILY beta-beta-alpha zinc fingers 246 271 IPR036236 -
Bisa03g2901 495 SMART c2h2final6 296 329 IPR013087 -
Bisa03g2901 495 SMART c2h2final6 247 269 IPR013087 -
Bisa03g2901 495 SMART c2h2final6 334 356 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g2901 Bisa-ChrBisa03 46831761 46833248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g2901 215 495 C2H2 Transcription Factor Family AT1G34370 68.056 4.09e-139 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa03g2901 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g2901 03 46831761 46833248 Bisa03g2901 03 46831761 46833248 ECH