Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g2790 ATGATCGGACCCAATTTCATGGACGAGATAGACTGCGGCAGCTTCTTCGACCACATTGACGATCTCCTCGATTTCCCCGCCGAAGACGTCGACGCCGCCGCCTTGCCGGCACCCTCCGTGAACTGCAACTCGTTCCCGAGCATCTGGCCCGGCGAGCCCGACTCGTTGCCCGGCTCCGATTCCGTGTTCTCTAGCAACACCGCGTCGGACCTCTCGGCGGAGCTCTCCGTTCCGTACGAAGACATTGTCCAATTGGAATGGCTTTCAAACTTTGTGGAGGACTCATTCTCTGGTGGAAGCCTCACCATGAAGAAAGTGGAGACGTCTTGCACCACCAATAACGACTCGGCACACAACCATTTCCAAACATCAAGCCCGGTTTCTGTCCTGGAAAGTAGCAGCTCCTGCTCCGGGGAGAAGCCTGTGGTGGCGACCCCTCGTAGCCCGCCGGAAATGGTTGTTCCTGTGCCTTGTGGTGGTCGTGCACGCAGCAAGCGTCCACGCCCCGCCACTTTCAAGCCTCGTCCTGCTATGCAAATCATTTCCCCTGCTTCCTCTGTCGGCGAGAACACACAGCGAAATTCAGATTCTGAGAATTTCGCTGAGTCTCATCCGGTGATCAAGATACCAAAACAAGCTTCTGGGGAGCACAAGAAGAAGAAGAAGATCAAAGTGACAGGTCCATTAGGTTCTTCTGCTGATACAAACCATAATGTGTCATCACAAGCAGTGAGGAAATGCATGCATTGTGAGATAACTAAGACACCGCAATGGAGGGCAGGGCCAATGGGGCCCAAAACACTCTGTAATGCTTGTGGGGTCCGCTACAAGTCAGGGAGGCTATTCCCAGAATACAGACCAGCAGCTAGTCCAACTTTTTGCCCATCAGTGCACTCCAATTCCCATAAGAAGGTGCTTGAGATGAGAAGCAAACCACCCCTTTCTCCTGCCTCACCAGAGCTCATTCCAAACACTAACAGCAGCCTTACCCTGGAGTACATTTGA 1005 0.5333 MIGPNFMDEIDCGSFFDHIDDLLDFPAEDVDAAALPAPSVNCNSFPSIWPGEPDSLPGSDSVFSSNTASDLSAELSVPYEDIVQLEWLSNFVEDSFSGGSLTMKKVETSCTTNNDSAHNHFQTSSPVSVLESSSSCSGEKPVVATPRSPPEMVVPVPCGGRARSKRPRPATFKPRPAMQIISPASSVGENTQRNSDSENFAESHPVIKIPKQASGEHKKKKKIKVTGPLGSSADTNHNVSSQAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSVHSNSHKKVLEMRSKPPLSPASPELIPNTNSSLTLEYI 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g2790 334 Gene3D - 241 291 IPR013088 GO:0006355|GO:0008270
Bisa03g2790 334 ProSitePatterns GATA-type zinc finger domain. 247 272 IPR000679 GO:0006355|GO:0043565
Bisa03g2790 334 MobiDBLite consensus disorder prediction 320 334 - -
Bisa03g2790 334 ProSiteProfiles GATA-type zinc finger domain profile. 241 277 IPR000679 GO:0006355|GO:0043565
Bisa03g2790 334 Pfam GATA zinc finger 247 280 IPR000679 GO:0006355|GO:0043565
Bisa03g2790 334 PIRSF Txn_fac_GATA_plant 2 325 IPR016679 GO:0003677|GO:0005634|GO:0045893
Bisa03g2790 334 PANTHER GATA TRANSCRIPTION FACTOR 15 319 - -
Bisa03g2790 334 FunFam GATA transcription factor 237 320 - -
Bisa03g2790 334 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 245 304 - -
Bisa03g2790 334 MobiDBLite consensus disorder prediction 183 201 - -
Bisa03g2790 334 CDD ZnF_GATA 246 303 IPR000679 GO:0006355|GO:0043565
Bisa03g2790 334 MobiDBLite consensus disorder prediction 304 334 - -
Bisa03g2790 334 MobiDBLite consensus disorder prediction 153 237 - -
Bisa03g2790 334 SMART GATA_3 241 291 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g2790 Bisa-ChrBisa03 44270684 44271895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g2790 19 314 C2C2-Gata Transcription Factor Family AT4G32890 36.789 1.90e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bisa03g2790 GATA 5.6e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g2790 03 44270684 44271895 Bisa03g2790 03 44270684 44271895 ECH