Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g2780 ATGGGTAATGTTGAAATTCCCAATTGGTTAGAACGGTTACCATTGGCCCCGGAATTTCGCCCAACTGATACTGAATTTGCGGACCCAATTGCTTACATTTCAAAGATTGAGAAGGAAGCTAGTGCTTTTGGAATATGTAAGATTATTCCACCTTTATCGAAACCATCCAAAAAATATGTCTTCTCTAATTTAAATAAGTCCCTTTTAAAGTGTCCAGAATTTACTTCAGATATCAATTCAGTTGGAGTTGATACTTCTTTGAAAATGGGTTCTGGGGAGAGTGGTAATGATGGGGAGGTGCGGGCTGTGTTTACCACAAGGCAACAAGAACTGGGGCAGAGTATGAAAAGAACCAAAGGAACAGTTCAAAGTTCATTCTCAGATATTCATAAGCAAGTATGGCAAAGTGGGGAGATTTATACACTTGAACAGTTTGAGTCTAAATCAAAGGCTTTTGCAAGAAGCATACTAGGTATGGTTAAGGAGGTTTCTCCACTGGTTATAGAGGCTATGTTTTGGAAGGCATCTTCAGAGAAGCCTATCTATGTGGAGTATGCCAATGATGTGCCTGGGTCTGCTTTTGGAGAATCTAAGGGTCAATTTCATTATATTCATAGAAGGCGAAGGAAAAAGGGTTATTATAAGAGGAGTCTAGATAGCTCTAATTGTCAAGGAACTGAAATGAATAGCATAAGAGATACCCAGACTGATGATGGTAAGGGTGCTTCTGCCCAAAGTCACGCAGACACATGTTTACAGTCATCAAAATCAACTACATCTCTGTCAACACTTTCATCAAATGAAGCTTCACAGTCTATGAAGCAGAAGAATACAGATGCCAGCAATGAAATGGAAGGCACTGCTGGTTGGAAGCTCTCAAACAGTCCCTGGAACTTGCAAGTTATTGCACGTTCGCCTGGCTCTTTAACACGTTTCATGCCAGATGATATTCCTGGTGTTACTTCCCCCATGGTATACATAGGTATGCTGTTTAGTTGGTTTGCTTGGCATGTAGAGGATCATGAGCTTCATAGCATGAATTTTCTTCACACTGGCTCTCCAAAGACTTGGTATGCTGTTCCTGGAGATTATGCCTTTGCTTTTGAGGAAATGATTCGGTCTGAGGCCTATGGTGGTAATATTGATCATTTAGCTGCTTTGACACTCTTAGGGGAGAAGACAACTCTTCTATCACCAGAGGTAGTTGTTGAATCTGGGATCCCTTGTTGCAGGTTGACGCAGAACCCTGGCGAATTTGTTGTGACCTTTCCAAGGGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGAACTCCTCAGTGGCTTACAGTAGCCAGGGAAGCTGCAGTCCGTAGGGCGGCAATGAATTATCTGCCGATGCTCTCCCATCAGCAACTACTTTACTTGTTGACTATGTCTTTTGTTTCAAGAGTGCCCAGAACATTATTACCAGGTGTTCGGAGTTCCCGTTTGAGAGACCGTCAGAGAGAAGAAAGAGAATTGTTAGTAAAAAGGTCTTTTATAAATGATATGCTGCAAGAAAACAGTCAGCTATCCATTCTTCTTGGAAAGCAATCTACTTATCGTGCTGTTTTGTGGAATGCTGATTTACTACCAGATTTAAGCAAGGATTCCCAGTTGCCTGATTTAACTTCTAGTACTGGAACCTCTATGGCAGACAATGTTTCCAATTTGAGTTCTACAGATCAGAGCAGTCATAGTTGTCCATTTGATGAGATGAGCTTGTATATGGAGAATCTGACTGATTTTTATGTTGGTGGTGATGGTCTTCCAAGTCACTTCCAAACTGATTCTGGGGCATTGGCTTGTGTGGGTTGTGGAATTCTTGGTTTTCCATTTATGACTGTGGTACAGCCATCAAAGAAATCAGTAATGGAGCATTTGCCTTTTTATCATCATCTTTTTCAAGATTCCTGTCTGGACAATAATGCTTCAATGCTAGGCTGTGTCTCAGGGAATCTCCTTTCTGCTTCTGATCTTTCTTCAGCAAAAGAACCATCAAAACTATCATTAATGAACTTTGATCAGGGTTGGAACACCTCTAGTGAATATTTGAGGCCACGTATTTTCTGCCTGGAGCATGCTATTCAGATTGTGGAGATGTTGCAGTGTAAAGGTGGAGCAAATGTGCTTGTAATATGCCATTCAGACTACCAGAAAATAAAGGCACATGCAAGTGCGGTAGCAGAGGAGATAGGTAGTGCTTTTGATTATATGGAGGTTCCATTAGATATTGCATCCCCTGAAGATTTGACCTTGATAGATCTTGCAATTGATGGTGAAGAACATAATGAATGTGAAGAGAACTGGACATCTAAACTAGGAATTAACCTGCGGTATTGTGTCAATGCAAGAAAGAACTCAACATCTAAGCCAGTTCCTTACAAACTGGCATTGGGAATGCTTTTCTCTGATAAAGGTCCTGGTTCAGAATTCTTATCTATAAATTGGCAGTCAAGGAGAACTCGCTCCAGAAGGTTTAAGCATTTAGCTTGTGCTAAAGCATGTGACAGTATTCAGAGAAAAAAGGATGATCAGTTAGAAGGAAAGACGGATGGCTCTGTTGCCAAAACGATGCTTCAATATTCAAGGAGAAAGTTCAGGTCAAAGCAAGGTTGTTTCTCTGGAGCAAACATGATCCATGAGCCCCATAAAGAGTCCGTAAATGTGTCAGCTGTCTCAGGTGGACATTGTTGTAATCTGGTTTCTGAAAATGAGGTCGACAATGAGAATTCTAGGAGTGATTGTGCAATGTCATGTGCCTCTGCTTCTACTGGATTGTCTCATAGGCAATCTCAAAACCAAGTTACTGAAATGGTCATCAGTATGAGTTTGAAAGCTCCTTCACAACCTTCGAATTCCTCTTTGGAACCTACGTTAATCAATGAAGATGCTGAATCAAAGGTCCACAGTCAAACCACAAAGGAATTAGAGATAGATGGAAATAATTTAGCAATTCCTAATGATTTGAAGATGCCTTACAAGATCAGTTCCTCAGAAATGTGTAGCAAGGACGATCAGATTTCTCATGAAAAGAAATACTCTAGCTCACATATTGTTGCTACAGGCAGAAAGATTGAAATGCTTACAGAGAATCATGCTGCAGAAGCGGTTAACATCAATAATAAGGGAAATAGCTTGGAGTTGGATGAAGTATATCCGGAACTTCAGTCTGCCCACAAAAGTGACATGTTGGAAGCTGCTTCATCTTCTGTTTTATTGGTAACTCAGCATACACTTGCTTCCGTGGAAGAAATTTCTGAAAGTGCAAAAAAGAATCATGGCACAAAAAGCATTAGCAATGCTACATCCTTAAAAGAGGCAAATAAACAGGAAAATTTTAGTTTGAATGGAAGCAACAAGGAACCTACTCTAAGTTATGATAAGCTAATAAATGAGGAAACTTCGAAGATTGAAGATTTTGAGGTTCCAAGAGAGCTCTGTGCCACTGTAAACTCGCATAATTCTGTAGCCTTGAATGTTGAAGTGCAGCACGCAACTCCGATTGCACAAGGTAACGATAAGGAAATAAATCAGTCTATTCTTCTTTCAGTGAATCAATGTGAATTTCCAAGCGGGAAATATGCTGAAGGTATTGATAATGAAGTCATTTTAGACTCTGAGAAGGAGCATCTGATCCAGAGTGAGAGCAGAATTAATGAGGAAAGAGTTTATGTTGCAAAGGGGAAACATAAAAGTGTATCGGTCTCAAGTTCTGAGGTTTCATTGGAACCCTGTCCTAAAGGAAACTCCAGCACTCAATTTATTTCAGATGTGAAAAACGAACTGGAAATCCTGCCAAAAAGTATGAATGATAAAGAAATCTGCTCTAGTGCTGTTACTGAGACATCATTAAAGGACACTTCTGTATCAATCCGGGGGTGTTCGACAATAGAGGGAGAGAGGTGTGCTAGAGACGACTTAAATGGGATTGAAGATCATTTTTCACAAGACAACAGGGAGCCGGAAAACTCTGAGTTAACTACACCAGCCATTAGGTCAAACACCCGGAAGAAAAGAAACAGGGAATTGGAGCAGATAACAAATAACAATATAAGTTGCTATGGCTTTGTTAGAAGTCCATGTGAAGGGTTGAGACCGAGGTCCAGTAAAATAGCCCCAGGTAGAAGCAGGATTGAAACTAGCAGTACAGTAGAGGAAAATCTGGAGGTTAAAAGAGCTAGGAGATCTTCGGATGTTGTGGTTCCTAGCAAGAAGAAAAAGGATGTCATTAAGAAGGCTCACAGGTGTGACATTGATGGTTGCCATATGAGTTTCGTGACTAAGGCAGAGTTAATGTTGCACAAACGCAACCGCTGCCCTTATGAAGGGTGTGGAAAGAAGTTCAGATCTCACAAATACGCTTTGCTTCACCAGCGTGTCCACGATGACGAGAGGCCCCTGAAGTGCCCTTGGGAAGGTTGCTCCATGTCATTCAAGTGGGCATGGGCAAGGACCGAGCATATAAGGGTGCATACGGGGGAAAAGCCATATCAATGCAAAGTTGAAGGATGTGGCCTTTCCTTCAGATTTGTATCCGATTTTAGTAGGCACAGACGGAAAACTGGGCACTATGTGAAGTCACTTGATTGA 4635 0.4112 MGNVEIPNWLERLPLAPEFRPTDTEFADPIAYISKIEKEASAFGICKIIPPLSKPSKKYVFSNLNKSLLKCPEFTSDINSVGVDTSLKMGSGESGNDGEVRAVFTTRQQELGQSMKRTKGTVQSSFSDIHKQVWQSGEIYTLEQFESKSKAFARSILGMVKEVSPLVIEAMFWKASSEKPIYVEYANDVPGSAFGESKGQFHYIHRRRRKKGYYKRSLDSSNCQGTEMNSIRDTQTDDGKGASAQSHADTCLQSSKSTTSLSTLSSNEASQSMKQKNTDASNEMEGTAGWKLSNSPWNLQVIARSPGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGSPKTWYAVPGDYAFAFEEMIRSEAYGGNIDHLAALTLLGEKTTLLSPEVVVESGIPCCRLTQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLTVAREAAVRRAAMNYLPMLSHQQLLYLLTMSFVSRVPRTLLPGVRSSRLRDRQREERELLVKRSFINDMLQENSQLSILLGKQSTYRAVLWNADLLPDLSKDSQLPDLTSSTGTSMADNVSNLSSTDQSSHSCPFDEMSLYMENLTDFYVGGDGLPSHFQTDSGALACVGCGILGFPFMTVVQPSKKSVMEHLPFYHHLFQDSCLDNNASMLGCVSGNLLSASDLSSAKEPSKLSLMNFDQGWNTSSEYLRPRIFCLEHAIQIVEMLQCKGGANVLVICHSDYQKIKAHASAVAEEIGSAFDYMEVPLDIASPEDLTLIDLAIDGEEHNECEENWTSKLGINLRYCVNARKNSTSKPVPYKLALGMLFSDKGPGSEFLSINWQSRRTRSRRFKHLACAKACDSIQRKKDDQLEGKTDGSVAKTMLQYSRRKFRSKQGCFSGANMIHEPHKESVNVSAVSGGHCCNLVSENEVDNENSRSDCAMSCASASTGLSHRQSQNQVTEMVISMSLKAPSQPSNSSLEPTLINEDAESKVHSQTTKELEIDGNNLAIPNDLKMPYKISSSEMCSKDDQISHEKKYSSSHIVATGRKIEMLTENHAAEAVNINNKGNSLELDEVYPELQSAHKSDMLEAASSSVLLVTQHTLASVEEISESAKKNHGTKSISNATSLKEANKQENFSLNGSNKEPTLSYDKLINEETSKIEDFEVPRELCATVNSHNSVALNVEVQHATPIAQGNDKEINQSILLSVNQCEFPSGKYAEGIDNEVILDSEKEHLIQSESRINEERVYVAKGKHKSVSVSSSEVSLEPCPKGNSSTQFISDVKNELEILPKSMNDKEICSSAVTETSLKDTSVSIRGCSTIEGERCARDDLNGIEDHFSQDNREPENSELTTPAIRSNTRKKRNRELEQITNNNISCYGFVRSPCEGLRPRSSKIAPGRSRIETSSTVEENLEVKRARRSSDVVVPSKKKKDVIKKAHRCDIDGCHMSFVTKAELMLHKRNRCPYEGCGKKFRSHKYALLHQRVHDDERPLKCPWEGCSMSFKWAWARTEHIRVHTGEKPYQCKVEGCGLSFRFVSDFSRHRRKTGHYVKSLD 1544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g2780 1544 SMART cupin_9 291 460 IPR003347 -
Bisa03g2780 1544 SMART JmjN_1 15 55 IPR003349 -
Bisa03g2780 1544 MobiDBLite consensus disorder prediction 215 291 - -
Bisa03g2780 1544 SMART c2h2final6 1512 1538 IPR013087 -
Bisa03g2780 1544 SMART c2h2final6 1429 1451 IPR013087 -
Bisa03g2780 1544 SMART c2h2final6 1482 1506 IPR013087 -
Bisa03g2780 1544 SMART c2h2final6 1452 1476 IPR013087 -
Bisa03g2780 1544 Pfam JmjC domain, hydroxylase 324 443 IPR003347 -
Bisa03g2780 1544 SUPERFAMILY Clavaminate synthase-like 291 458 - -
Bisa03g2780 1544 MobiDBLite consensus disorder prediction 1101 1120 - -
Bisa03g2780 1544 Gene3D Cupin 9 464 - -
Bisa03g2780 1544 SUPERFAMILY beta-beta-alpha zinc fingers 1492 1535 IPR036236 -
Bisa03g2780 1544 MobiDBLite consensus disorder prediction 1328 1351 - -
Bisa03g2780 1544 MobiDBLite consensus disorder prediction 555 580 - -
Bisa03g2780 1544 Gene3D Classic Zinc Finger 1450 1536 - -
Bisa03g2780 1544 PANTHER LYSINE-SPECIFIC DEMETHYLASE 8 1478 - -
Bisa03g2780 1544 ProSitePatterns Zinc finger C2H2 type domain signature. 1454 1476 IPR013087 -
Bisa03g2780 1544 ProSiteProfiles Zinc finger C2H2 type domain profile. 1512 1538 IPR013087 -
Bisa03g2780 1544 FunFam Probable lysine-specific demethylase ELF6 1479 1508 - -
Bisa03g2780 1544 ProSitePatterns Zinc finger C2H2 type domain signature. 1484 1506 IPR013087 -
Bisa03g2780 1544 Pfam jmjN domain 17 50 IPR003349 -
Bisa03g2780 1544 ProSiteProfiles Zinc finger C2H2 type domain profile. 1452 1481 IPR013087 -
Bisa03g2780 1544 ProSitePatterns Zinc finger C2H2 type domain signature. 1514 1538 IPR013087 -
Bisa03g2780 1544 ProSiteProfiles JmjC domain profile. 294 460 IPR003347 -
Bisa03g2780 1544 SUPERFAMILY beta-beta-alpha zinc fingers 1452 1489 IPR036236 -
Bisa03g2780 1544 MobiDBLite consensus disorder prediction 217 291 - -
Bisa03g2780 1544 ProSiteProfiles Zinc finger C2H2 type domain profile. 1482 1511 IPR013087 -
Bisa03g2780 1544 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g2780 Bisa-ChrBisa03 44032109 44044353 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g2780 1 880 C2H2 Transcription Factor Family AT5G04240 57.383 0.0 1002
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa03g2780 JmjC 8.3e-37 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g2780 03 44032109 44044353 Bisa03g2780 03 44032109 44044353 ECH