Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g2735 ATGGCTGGGAAGGAAGAGAACCGAATATTTGTTGGAGGCTTGTCTTGGGAAGTGACGGAGCGTCAGCTCGAGCATGCCTTTGGCCGTTACGGCAAAGTTATTGAATCCCAGATCATGTTGGAAAGAGACACGGGCCGTCCACGTGGATTTGGGTTTATCACCTTTGCAGATAGGAGGGGAATGGAGGATGCGATTAAGGAAATGCATGGGCGGGAGCTTGGTGACCGCATCATCTCTGTCAATAAGGCCCAGCCCAAAATGGGGGCAGATGATCTAGACCATGGTTACAGGGGTGGCTACTCATCAGGTGGTAGAGGAAGCTATGGGGTGGGAGACAGGGTAGGACAGGATGACTGCTTCAAATGTGGGCGTCCTGGGCACTGGGCTCGAGACTGTCCTTTGGCGGGAGGTGGTCGTGGTCGTGGTGGCGGCTCATTTTCTTCACGTCCTAGGTTTGGAGGTGCCGGGGGCCATGGGGATCGCTTTGGTGGTGAACGGGATCGTTATTTTGATGATCGTTATGATGGAGGGCGTTACGCAGATAGGGAACGCTTTGACAGCCGTGATAACAAATATGGCAGCCGTGATCGCTATGCTAGCGACAGGTACCCAGCTAGTGGAGATCGATTTGCAAGTGAACGATACAGTGGTTCAGATCGTTACCCACAAAATGGTTATGGCAAAGATAGAGCCTATGATAAGTATGGCAGTGCAAGAGGAGGTAATGATAGGTATGGAAGTGGTATGCCAGCTCGAGACGAAGGAAGGAGTTATAGGGGTAGGGTTGGTCCCTATGACCGCCCAAGCAGGGGCGGTCGTCCATCTTCATTCGACCGCTACTGA 843 0.5267 MAGKEENRIFVGGLSWEVTERQLEHAFGRYGKVIESQIMLERDTGRPRGFGFITFADRRGMEDAIKEMHGRELGDRIISVNKAQPKMGADDLDHGYRGGYSSGGRGSYGVGDRVGQDDCFKCGRPGHWARDCPLAGGGRGRGGGSFSSRPRFGGAGGHGDRFGGERDRYFDDRYDGGRYADRERFDSRDNKYGSRDRYASDRYPASGDRFASERYSGSDRYPQNGYGKDRAYDKYGSARGGNDRYGSGMPARDEGRSYRGRVGPYDRPSRGGRPSSFDRY 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g2735 280 FunFam glycine-rich RNA-binding protein RZ1C 1 115 - -
Bisa03g2735 280 Gene3D - 116 142 - -
Bisa03g2735 280 ProSiteProfiles Zinc finger CCHC-type profile. 119 133 IPR001878 GO:0003676|GO:0008270
Bisa03g2735 280 MobiDBLite consensus disorder prediction 188 203 - -
Bisa03g2735 280 MobiDBLite consensus disorder prediction 188 280 - -
Bisa03g2735 280 Pfam Zinc knuckle 119 133 IPR001878 GO:0003676|GO:0008270
Bisa03g2735 280 Gene3D - 1 115 IPR012677 -
Bisa03g2735 280 SUPERFAMILY RNA-binding domain, RBD 4 109 IPR035979 GO:0003676
Bisa03g2735 280 SUPERFAMILY Retrovirus zinc finger-like domains 105 138 IPR036875 GO:0003676|GO:0008270
Bisa03g2735 280 MobiDBLite consensus disorder prediction 138 167 - -
Bisa03g2735 280 PANTHER SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL 4 272 - -
Bisa03g2735 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Bisa03g2735 280 SMART rrm1_1 8 81 IPR000504 GO:0003723
Bisa03g2735 280 SMART c2hcfinal6 118 134 IPR001878 GO:0003676|GO:0008270
Bisa03g2735 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g2735 Bisa-ChrBisa03 43004293 43009021 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g2735 9 88 C2H2 Transcription Factor Family AT2G19380 38.750 3.23e-12 64.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g2735 03 43004293 43009021 Bisa03g2735 03 43004293 43009021 ECH