Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g2719 ATGATTGTTCCTTCGAGAATGCTTCTTCCTTCTATCACCTGCATTCTCTTCTTATGCCTCTTGAGTTCTTTCTCTCCCCCCATTGAAGCTCAAGCTTCGTCCTTCAACCTTACCTTGCCCCACCAGCATCCTTACCCTGAAGCTGTGGTTCAGGAAGTTCAAAGGAGAGTAAATGCGTCTCTTTCCCGGCGGCAACTACTCGGCACCGGGAAGGACCAGAGTTTTAACTGCCTCACCGGCAACCCCGTGGACGACTGCTGGCGGTGCGACCCAAACTGGGCGGCGAACCGGCAGAAGCTGGCCAACTGCGGCATTGGGTTTGGCGGCGACGCTATGGGCGGGAAGGGCGGCCAGATCTACGTCGTCACCGACTCCTCCGACGCCGACCCAGCGAACCCCACTCCGGGGACCCTCCGGCACGCCGTGATCCAGGAGGAGCCCCTCTGGATCGTCTTCTCCCAATCCATGACCATCACCCTAAAGCACGAGCTCATCTTCAACAGCTTCAAGACCGTCGACGGCCGCGGCGCCGCGGTCCACATAACGGGCCACGGCTGCCTGACCATCCAGTACGTCTCCAATATCATAATCCACAACGTCCACATCCACCACTGCAAACCCTCCGGCAACACCAACATCCGGTCCAGCCCCACCCATGTCGGCTGGCGGAGCAAGTCCGACGGCGACGGGATCTCCATCTTCGCGTCGCGCAAGATCTGGATCGACCATTGCGCGCTGTCGTACTGCACCGACGGGCTCGTGGACGCCATAATGGGGTCGACGGGGATAACCATTTCGAACAGCCACTTCGCGCACCACGACGAGGTGATGCTGCTGGGGCACGACGACAAGTACTCGCCGGACACGGGGATGCAGGTGACGATTGCGTTCAATCACTTCGGCGAGGGTTTGGTTCAGAGGATGCCACGGTGTCGTTTGGGGTATATCCATGTGGTGAATAACGATTTTACGCAGTGGCAGATGTATGCCATCGGCGGGAGTGCCAACCCCACCATTAACAGCCAGGGCAATCGCTATACGGCGCCGACCAATCCTGATGCTAAAGAGGTGACGAAGCGCGTGGAAACAGACGAGAGGGATTGGACCGGCTGGAACTGGAGGACGGAAGGGGACATAATGGTAAATGGAGCATTCTTTGTGCCATCCGGTGTGGGCATGAGCACGCAATACGCTAAGGCCTCCAGCGTGGATCCCAAATCTGCCGTCCAGATCGACCAACTCACCATGAACTCCGGCGTCTTCGGGGATCCCAGGGATAATGGGGATATATTTCCCGGATTCAGTGGTGGCGGGTCCGTCACTGGCACCGGTGCCACCGGCACCGGGTCCGGTGGTGCCGGTGGCGCCGGTGATAGCGACAATGGGGACTTCTTTGGAATGGTGTTCAAGGGTAGTACCAGCGAAGCTGCAATGCCACCCTCAATCTCCATTGTTTCAACCTTTTTGTCTCTTTTCATTATTTTTATTTTGTACACTTTCACCAACCATGCTCTTCTATTATCGCCACTATAA 1533 0.5708 MIVPSRMLLPSITCILFLCLLSSFSPPIEAQASSFNLTLPHQHPYPEAVVQEVQRRVNASLSRRQLLGTGKDQSFNCLTGNPVDDCWRCDPNWAANRQKLANCGIGFGGDAMGGKGGQIYVVTDSSDADPANPTPGTLRHAVIQEEPLWIVFSQSMTITLKHELIFNSFKTVDGRGAAVHITGHGCLTIQYVSNIIIHNVHIHHCKPSGNTNIRSSPTHVGWRSKSDGDGISIFASRKIWIDHCALSYCTDGLVDAIMGSTGITISNSHFAHHDEVMLLGHDDKYSPDTGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWQMYAIGGSANPTINSQGNRYTAPTNPDAKEVTKRVETDERDWTGWNWRTEGDIMVNGAFFVPSGVGMSTQYAKASSVDPKSAVQIDQLTMNSGVFGDPRDNGDIFPGFSGGGSVTGTGATGTGSGGAGGAGDSDNGDFFGMVFKGSTSEAAMPPSISIVSTFLSLFIIFILYTFTNHALLLSPL 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g2719 510 SMART amb_all 155 352 IPR002022 -
Bisa03g2719 510 SUPERFAMILY Pectin lyase-like 71 397 IPR011050 -
Bisa03g2719 510 PRINTS Pollen allergen Amb family signature 127 152 IPR018082 -
Bisa03g2719 510 PRINTS Pollen allergen Amb family signature 227 248 IPR018082 -
Bisa03g2719 510 PRINTS Pollen allergen Amb family signature 400 423 IPR018082 -
Bisa03g2719 510 PRINTS Pollen allergen Amb family signature 103 120 IPR018082 -
Bisa03g2719 510 PRINTS Pollen allergen Amb family signature 307 326 IPR018082 -
Bisa03g2719 510 PRINTS Pollen allergen Amb family signature 371 395 IPR018082 -
Bisa03g2719 510 PRINTS Pollen allergen Amb family signature 163 179 IPR018082 -
Bisa03g2719 510 PRINTS Pollen allergen Amb family signature 329 348 IPR018082 -
Bisa03g2719 510 FunFam Pectate lyase 80 422 - -
Bisa03g2719 510 Gene3D - 80 422 IPR012334 -
Bisa03g2719 510 PANTHER PECTATE LYASE 18-RELATED 41 421 IPR045032 GO:0030570
Bisa03g2719 510 Pfam Pectate lyase 163 344 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g2719 Bisa-ChrBisa03 42706898 42714773 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g2719 35 427 Polysaccharide Lyase AT3G54920 68.657 0.0 583