Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g2699 ATGAGGAGTGATTCACAGTTAGTCTTCCTCTGTGTCTATATACCCAATCTATATAATCCCACCACATCCTCTTCCCTTCCTCTCTGTCTTCCTCTGTTCTCTCTGCTTTCCTCTGCTTCAAGCTCATCAGAACCAGATTCAGCCATGGAAGCACCAGAAGAAGTCTCTCCGGGGGCCCAGGACCAATCCCACATCGTCAAAGGCAAGAGGACCAAAAGGGTAAGACCTCAGTCTCCCATCCCCAAAAGCCACGACGAAAACAACAACAACAACAATAACAGCAACAGCGACGAAAATTCAGCCGCCGCCACTTGTGCAGAATTCAAAGAAAACCACCACCACCACCACAACAGCGCAGAGGAAGAGGAGGACATGGCCAATTGCTTGATCCTTCTGGCTCAGGGCCAGTCCCGGGAATCTCCGAGGCTCGCCGAGGAAGGAGATGGCAGGACGACGACGACGACGACGAACAAGTGTGATAACAATAGGAGACTCATGGAGGCTCACAAAGCAGGGTTTTATGTGTATGAATGCAAGACTTGCAATAAGAGCTTCCCTTCTTTTCAAGCCCTGGGAGGCCACAGAGCCAGCCATAGGAAGCCCAAGGCCTTAGCCACTGCAGAGCCAGAGAAGAAGATGAAGGAAGAAGGGTTTGTATTATTCAAAAACAACAACAGCAATGACAACAATCAGATGCATAGTCATAGTCATAATCGAAACAACAACAACACATTTTCTCTTCAGTTATTCAACAGTGGAATTGGGAACAGTAAGAGTAAGGTTCATGAGTGTTCTATTTGTGGGGCTGAATTTGCATCAGGTCAGGCTTTGGGAGGGCACATGAGAAGGCACAGGACCGCCAACACGACGTCGTCTGATCACTATCATCACCATGAGGAACATCATCATCATCAACCCAGAAAGAAAAAGAATGTTCTGTCTCTGGATTTGGATCTGAATCTTCCTGCCCCAGAAGATGACCACAGAGAAAGAGAATCTTCATCTTCAAAATTTGCCTTTGAATCCAACAATCAGCAGAAAGAACAAGAAGCGAGTCTGGGTTTTTCTTCTGCGCCAGCTTTGGTGGATTGCCATTACTGA 1101 0.4723 MRSDSQLVFLCVYIPNLYNPTTSSSLPLCLPLFSLLSSASSSSEPDSAMEAPEEVSPGAQDQSHIVKGKRTKRVRPQSPIPKSHDENNNNNNNSNSDENSAAATCAEFKENHHHHHNSAEEEEDMANCLILLAQGQSRESPRLAEEGDGRTTTTTTNKCDNNRRLMEAHKAGFYVYECKTCNKSFPSFQALGGHRASHRKPKALATAEPEKKMKEEGFVLFKNNNSNDNNQMHSHSHNRNNNNTFSLQLFNSGIGNSKSKVHECSICGAEFASGQALGGHMRRHRTANTTSSDHYHHHEEHHHHQPRKKKNVLSLDLDLNLPAPEDDHRERESSSSKFAFESNNQQKEQEASLGFSSAPALVDCHY 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g2699 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 176 203 IPR013087 -
Bisa03g2699 366 MobiDBLite consensus disorder prediction 276 355 - -
Bisa03g2699 366 Gene3D Classic Zinc Finger 174 284 - -
Bisa03g2699 366 MobiDBLite consensus disorder prediction 321 336 - -
Bisa03g2699 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 262 289 IPR013087 -
Bisa03g2699 366 PANTHER ZINC FINGER PROTEIN ZAT5 115 347 - -
Bisa03g2699 366 ProSitePatterns Zinc finger C2H2 type domain signature. 264 284 IPR013087 -
Bisa03g2699 366 MobiDBLite consensus disorder prediction 137 158 - -
Bisa03g2699 366 SUPERFAMILY beta-beta-alpha zinc fingers 175 284 IPR036236 -
Bisa03g2699 366 MobiDBLite consensus disorder prediction 40 101 - -
Bisa03g2699 366 Pfam C2H2-type zinc finger 261 286 - -
Bisa03g2699 366 Pfam C2H2-type zinc finger 175 201 - -
Bisa03g2699 366 MobiDBLite consensus disorder prediction 81 101 - -
Bisa03g2699 366 MobiDBLite consensus disorder prediction 337 353 - -
Bisa03g2699 366 ProSitePatterns Zinc finger C2H2 type domain signature. 178 198 IPR013087 -
Bisa03g2699 366 SMART c2h2final6 262 284 IPR013087 -
Bisa03g2699 366 SMART c2h2final6 176 198 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g2699 Bisa-ChrBisa03 42203792 42204892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g2699 49 366 C2H2 Transcription Factor Family AT5G04390 41.099 5.51e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa03g2699 zf-C2H2_6 2.8e-12 CL0361