Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g2633 ATGAACGATCTCCTAAAGGTAATTTCTGGCTATGATGGGATGTTTGATATCTTTTTTGCTTGCGGAGAAAATGTTGGAAAATGTAAGGATTTGGAGTTTGGGAATTCTGAAAATTTTGAGCTTGTGAGTCCCGAGCATTATGGGTCTCCTGCTAAAATGCGCAGCTTTTGGCTGACTTCGGTGGACTTTGAAGGCTTTACAGAAGATTCATTTGAGATCCCACGTGGGCAAGATCATGGAGGTGGAGATATTGAGCTAGGGGCAAATGGACTGAATACAGGAGACATGGGCTTGGATAACTTCTTCAAAAAGGTTCAAGACCTTGATAAACAGTATGCAAAGCTGGATAAGCTTCTGAAAAAGCTTCAGGATTCCCACGAGGAGTCTAAAGCTGTAACCAAAGCTCCTGCCATGAATACTATTAAGCAGAGAATGGAGAAAGACGTTGATGAAGTTAAGAAAGTTGCTCATTTCATTAAGACAAAAATTGAAGAACTGGATAAAGAGAATTTGGCAAATAGGCAAAAGCCTGGATGCGGAAAAGGAACTGGTGTTGACCGTTCAAGAACAGCAACAACCGTAGCCTTAAAAAAGAAACTGAAGGACAAGATGGCTGAATTTCAGATCCTACGGGAAGCCATCCATCAAGAATATCGCGAGGTTGTTGAGAGACGTGTCTTTACAGTAACCGGCACAAGAGCTGATGAGGAGACGATCGACAGATTAATTGAGACAGGAGATAGTGAGCAGATTTTCCAGAAGGCTATTCAGGAACAAGGACGAGGCCAGGTAATAGATACCCTGGCAGAAATCCAAGAGCGGCACGAAGCAGTTAGAGAAGTCGAGAGGAAACTTCTTGAATTACAACAGATATTCATGGATATGGCGGTGCTAGTTGATGCACAGGGAGACATGCTTGACAACATAGAATCACAGGTCTCAACTGCAGTAGATCACGTGCAGCAGGGGAACACTGCCCTCCAGAGAGCCAAAAGCCTACAGAAGAATTCAAGAAAATGGATGTGCGTTGCAATCATTATTCTTCTTATCGTTGTTATAATCATAGTCGTTGCTGTCATCAAACCATGGGCTATTAAAAAGGGTGCTTAG 1110 0.4279 MNDLLKVISGYDGMFDIFFACGENVGKCKDLEFGNSENFELVSPEHYGSPAKMRSFWLTSVDFEGFTEDSFEIPRGQDHGGGDIELGANGLNTGDMGLDNFFKKVQDLDKQYAKLDKLLKKLQDSHEESKAVTKAPAMNTIKQRMEKDVDEVKKVAHFIKTKIEELDKENLANRQKPGCGKGTGVDRSRTATTVALKKKLKDKMAEFQILREAIHQEYREVVERRVFTVTGTRADEETIDRLIETGDSEQIFQKAIQEQGRGQVIDTLAEIQERHEAVREVERKLLELQQIFMDMAVLVDAQGDMLDNIESQVSTAVDHVQQGNTALQRAKSLQKNSRKWMCVAIIILLIVVIIIVVAVIKPWAIKKGA 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g2633 369 Pfam Syntaxin 100 303 IPR006011 GO:0016020
Bisa03g2633 369 CDD SNARE_syntaxin1-like 267 329 - -
Bisa03g2633 369 Coils Coil 149 169 - -
Bisa03g2633 369 SUPERFAMILY t-snare proteins 95 323 IPR010989 GO:0016020|GO:0016192
Bisa03g2633 369 Gene3D - 95 222 - -
Bisa03g2633 369 Coils Coil 105 128 - -
Bisa03g2633 369 FunFam Syntaxin 132 93 222 - -
Bisa03g2633 369 Pfam SNARE domain 304 356 IPR000727 -
Bisa03g2633 369 FunFam Syntaxin 132 261 361 - -
Bisa03g2633 369 Gene3D - 261 361 - -
Bisa03g2633 369 SMART tSNARE_6 263 330 IPR000727 -
Bisa03g2633 369 SMART SynN_4 93 219 IPR006011 GO:0016020
Bisa03g2633 369 ProSitePatterns Syntaxin / epimorphin family signature. 274 313 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bisa03g2633 369 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 268 330 IPR000727 -
Bisa03g2633 369 CDD SynN 98 255 IPR006011 GO:0016020
Bisa03g2633 369 Coils Coil 197 217 - -
Bisa03g2633 369 PANTHER SYNTAXIN 106 352 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g2633 Bisa-ChrBisa03 40510585 40526915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g2633 70 369 SNARE and Associated Proteins AT3G03800 71.333 4.83e-149 421