Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g2587 ATGAGTTCACATCACTTTAAGAATGGTGGTCACGGTTTCAGTGGAGCTATGAAGTTTTTACCTTCAATCCCTGTTCATCCTGCTTTTCCTCTTCCTAACACTTTTGGGGTTGAGATGGACTCTAACAAATCTGAGATAGGCTTTCGGATTTTGAGCCCTTCGGTCCAGACAGAGAGTAATAATGGGTTCTTTGGGGTTGAGAAGAAGGCCATGTCTCTGAAACATGGTGAAGAATCAGAAGCAAAGAGCTGTGGTGCCGGAAAAAATGGCCACACCAAGCTCTGCGCTAGAGGCCACTGGAGACCAGCCGAAGATGCCAAACTCAAAGAGCTCGTAGCTCAGTACGGTCCTCAAAACTGGAACTTGATCGCTGACCATCTCGAAGGAAGATCAGGCAAGAGTTGCAGATTGAGGTGGTTTAATCAGTTAGATCCTAGGATTAACAGGAGGGCTTTCTCTGAGGAAGAGGAGGAGAGGCTGTTAGCTGCTCACAAAGGGTACGGTAACAAGTGGGCTTTGATCGCTAGGCTGTTTCCTGGGAGGACAGATAATGCAGTGAAGAACCATTGGCACGTGATCATGGCTAGGAAACAGAGAGAGCAGTCACATGTGTACAGAAGGAGAAAGCCCTCTTCTGTTCAGATTATCCCAACGGGACTGAAACTGACTCTAACTAACAATGCAGGCAGCGATTCAAGCATCTCAAGCACCAGAGACGAGTCTGCTTCAACCTGCACTGATGTTGTTTTCTCTAATCTCAGTCCAGTTTTGAGTAATCAAGGCCATGGAAAACACATGGGCTTTGACAGGATATTTGGTGGGGTGGGAAAGGGGAAGGGTGTGGACCAATCAAATGTTTCAGATTCAAAGTCGGAAGTATCAGTATCTGAGTCAGTCGGCACCAATGGAAGCAATCATCTGTCAAATTCTGGGGAAAGTGGGAACGTGGGCGCTAAGATTGACATGCCATTCATTGATTTTCTGGGAGTGGGAGCTGCTGCATACTAA 1008 0.4692 MSSHHFKNGGHGFSGAMKFLPSIPVHPAFPLPNTFGVEMDSNKSEIGFRILSPSVQTESNNGFFGVEKKAMSLKHGEESEAKSCGAGKNGHTKLCARGHWRPAEDAKLKELVAQYGPQNWNLIADHLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLLAAHKGYGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSHVYRRRKPSSVQIIPTGLKLTLTNNAGSDSSISSTRDESASTCTDVVFSNLSPVLSNQGHGKHMGFDRIFGGVGKGKGVDQSNVSDSKSEVSVSESVGTNGSNHLSNSGESGNVGAKIDMPFIDFLGVGAAAY 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g2587 335 Gene3D - 97 148 - -
Bisa03g2587 335 SMART sant 148 196 IPR001005 -
Bisa03g2587 335 SMART sant 96 145 IPR001005 -
Bisa03g2587 335 FunFam MYB transcription factor 97 148 - -
Bisa03g2587 335 ProSiteProfiles Myb-like domain profile. 97 143 IPR001005 -
Bisa03g2587 335 PANTHER MYB PROTEIN-RELATED 97 241 - -
Bisa03g2587 335 CDD SANT 100 141 IPR001005 -
Bisa03g2587 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 143 IPR017930 -
Bisa03g2587 335 ProSiteProfiles Myb-like domain profile. 144 194 IPR001005 -
Bisa03g2587 335 CDD SANT 160 191 IPR001005 -
Bisa03g2587 335 Coils Coil 332 335 - -
Bisa03g2587 335 SUPERFAMILY Homeodomain-like 97 190 IPR009057 -
Bisa03g2587 335 Pfam Myb-like DNA-binding domain 100 160 - -
Bisa03g2587 335 MobiDBLite consensus disorder prediction 279 315 - -
Bisa03g2587 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 144 198 IPR017930 -
Bisa03g2587 335 MobiDBLite consensus disorder prediction 282 315 - -
Bisa03g2587 335 Gene3D - 151 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g2587 Bisa-ChrBisa03 39495783 39496979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g2587 87 333 MYB Transcription Factor Family AT5G17800 49.206 4.55e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bisa03g2587 Myb_DNA-bind_6 1.6e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g2587 03 39495783 39496979 Bisa03g2587 03 39495783 39496979 ECH