Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g2517 ATGATGTCAAATAGCAGAAACACTCACTGGTGTTATAGTTGCAGGAGGCCAGTTCAGCTGCAGGCACGAGATGTGGTCTGCCCCAACTGTAGTGAGGGATTTGTTCAAGAACTTAATGATATGGTCATCAACCCACTGGATTTCCTTGGCCTAGACAATGGGGACGAACGTGACCGAAGGTTCAGACTTATGGAAGCCTTCTCAGCCTTTATGAGGCATCGACCAGTAGATAGAAGCCATAGCCATGATATCATAGTTGGATCTGAATCAATTCCTGAACGTGGTCCACGGTATGCTCCTTTGCTGCTCTTTGGTGGCCAGATTCCGTTCAGATTGTCTGGAAATGGCGGCTTTGAAGCTCTTTTCAACGGGACTCCTGGAATTGGTCTGATGCATGGAAATACTGGTGATTACTTTATTGGTCCTGGACTGGAAGAATTGTTTGAACAGCTTTCAGCTAATGATCGACGAGGTCCTCCACCAGCAGCTAGGTCCTCAATAGACGCAATGCCTACTATTAAAATCACACAAAGGCTTCTTCGTTCAAATTCACATTGTCCAGTATGCCAAGATAAATTTGAGCTGGGGTGTGAAGCAAGGCAAATGCCATGTAACCATATATATCACTCAGATTGCATTGTTCCATGGTTGGTGCAGCATAACTCCTGCCCTGTTTGCCGCCAGGAGTTGCCACTGCAAGGATTGAGTGGCAACCGTGGTTCAAACAGTCGAAGTAGAACCAGTTCTAGTGGTAATGCCAATGGAAGGGTAAGTGGTAGAGAGAACCAGGGAAGGCGGAATCCATTCTCCTACTTTTGGCCTTTTCGTTCATCTAATTCTAGTAATGGTGGAGTAGGAGGAAGCAGCTCACCAACACAGCCTATCCCTGAGAATAGCCACAACACGGAGTATTCTGGATGGCCATTTGAGTAA 933 0.4641 MMSNSRNTHWCYSCRRPVQLQARDVVCPNCSEGFVQELNDMVINPLDFLGLDNGDERDRRFRLMEAFSAFMRHRPVDRSHSHDIIVGSESIPERGPRYAPLLLFGGQIPFRLSGNGGFEALFNGTPGIGLMHGNTGDYFIGPGLEELFEQLSANDRRGPPPAARSSIDAMPTIKITQRLLRSNSHCPVCQDKFELGCEARQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPLQGLSGNRGSNSRSRTSSSGNANGRVSGRENQGRRNPFSYFWPFRSSNSSNGGVGGSSSPTQPIPENSHNTEYSGWPFE 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g2517 310 Pfam Ring finger domain 185 227 IPR001841 -
Bisa03g2517 310 MobiDBLite consensus disorder prediction 234 265 - -
Bisa03g2517 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 232 IPR013083 -
Bisa03g2517 310 MobiDBLite consensus disorder prediction 234 266 - -
Bisa03g2517 310 SUPERFAMILY RING/U-box 166 233 - -
Bisa03g2517 310 MobiDBLite consensus disorder prediction 280 310 - -
Bisa03g2517 310 SMART ring_2 186 226 IPR001841 -
Bisa03g2517 310 Pfam zinc-ribbon 7 38 IPR039525 GO:0061630
Bisa03g2517 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 81 231 - -
Bisa03g2517 310 CDD RING-H2_RNF126-like 186 227 - -
Bisa03g2517 310 FunFam E3 ubiquitin-protein ligase RING1-like 149 233 - -
Bisa03g2517 310 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g2517 Bisa-ChrBisa03 38048772 38049704 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g2517 121 231 C3H Transcription Factor Family AT5G01980 41.739 5.85e-25 102