Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g2508 ATGACGGAGGAGTCAAACGACATGTCGTCGAGGGAGGATTTTCTGAGTCTGAAGCTCATGGTGGGTCTGGGTCACCAAGGCGAATCCTCGTCGTCCGATCCGAGACCGATCGAGCCGTCTAATAGTAACAATGTGAATACCAACAACCAGCGGTTATTCTGTTGCAAATTCTGTAACAAGAGGTTCAACAGCTCTCAAGCTCTTGGGGGACACCAGAACGCGCACAGGCGAGAGCGCGTGTTGTCCAAGATCGATAAGGAGCTCGAAATGGGCACGTTTGGACGCTTCGGCTCCCACTACTTTTGTCCTTACTCGCCCATGGCTCAACCTCACTTGCACCCCCTGGCTCACCTGGCTTGGCCTCGTTGGGCCCACGCCCACGCTCTGCCCGGCTCCCCGCTCGACGCCTTCCGGTTCGGAACGAGGAGCTCTTTGACTGGAGGACCGGTTCGACCCGGATTGAACCGCGCAAGTGGTGACCTCAACCCACACGGTGAGGGGGGTGCTGCTGTTGCAGGACTTCACGGGAATTTCAATGCTGGAAATATGCACTCTTCATCTTCCGCCTCAGGCCCAGACTTGTCCCTCAATCTCTAA 597 0.5628 MTEESNDMSSREDFLSLKLMVGLGHQGESSSSDPRPIEPSNSNNVNTNNQRLFCCKFCNKRFNSSQALGGHQNAHRRERVLSKIDKELEMGTFGRFGSHYFCPYSPMAQPHLHPLAHLAWPRWAHAHALPGSPLDAFRFGTRSSLTGGPVRPGLNRASGDLNPHGEGGAAVAGLHGNFNAGNMHSSSSASGPDLSLNL 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g2508 198 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 80 IPR013087 -
Bisa03g2508 198 Pfam C2H2-type zinc finger 53 78 - -
Bisa03g2508 198 MobiDBLite consensus disorder prediction 25 44 - -
Bisa03g2508 198 ProSitePatterns Zinc finger C2H2 type domain signature. 54 75 IPR013087 -
Bisa03g2508 198 Gene3D Classic Zinc Finger 37 91 - -
Bisa03g2508 198 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 37 110 IPR044246 GO:0009788
Bisa03g2508 198 SUPERFAMILY beta-beta-alpha zinc fingers 49 80 IPR036236 -
Bisa03g2508 198 MobiDBLite consensus disorder prediction 24 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g2508 Bisa-ChrBisa03 37937715 37938311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g2508 42 90 C2H2 Transcription Factor Family AT5G01860 55.102 3.08e-12 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa03g2508 zf-C2H2_6 9.6e-08 CL0361