Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g2398 ATGGATCACAGAAGGCAACCCAAGGACTCGCTCTCGTACTCTAGTCTCTTCAATCTCGAGTCTTTGATGAATTTTCAACTTCCACAACAAGATGATGATTTTGATTATTATGGGAATAGTAGTCAGGATGAGAGCAGAGATAGCCAAGGTGGGGCAATTGCAAACCACAGTAATGGGAATATGCGCGGAAGGGAAGTAAATTTGTTGAAGAAGAGAAAGTGGTCTCAAAACAGTGACGACGAGGACAAGGGTATTTTTTATGGGACACACATGACAGAGGAGCGATACCGAACAATGCTGGGGGAACATATTCAGAAATACAAGAGGAGGTATAAAGATACTTCTTCTAGCCCTGCTCAAAATCGGGTTGGTGCTCAAATCATTAAAAGTAATATAGGTTTGAAAGCTCGAAAGTCAGGGAATGAGCACAGAGGAGGATTTCATGCTGTGGAGACTACATCTGAGTGGCCAAATGATACTAATCCTCAGAAACCTGTAAACTATCGTGAAGCAGATTTCACCCAGCAATATGGCCCTGATAGAACTGTCTATGAACCAGCTTCCTTAGACATTGGGGATGGTGTCACTTACAAAATTCCTCCTACTTATGATAAGTTAGCACCGATGCTGAACCTTCCAAGTTTCTCAGATATCCAGGTGGAGGAATTTTACTTAAAGGGTACCTTGGATTTGGGGTCCTTGGCTGCAATGATGGCTTCTGATAAGAGGTTTGGGACTAGAAACCGAGCAGGCATGGGGGAAGCCCTATCCCAGTATGAATCGCTTCAGGCACGATTGAAGGCCATGTCAGTGTCTAATTTGCCTCATCAATTTAGTCTGAAAGTATCTGATGTTGGTTTGAATTCCTCCATCCCAGAAGGAGCTGCTGGAAGTATAAAGCGATCTATTTTGTCTGAGGGTGGTGTATTGCAGGTTTATTATGTGAAGGTTTTGGAGAAAGGTGATACCTATGAGATAATTGAACGAAGCCTACCTAAGAAGCAAAAAGTAAAGAAAGACCCTTCTCTGATTGAGAAGGAGGAAACAGAAAGAATTGGAAAGGTCTGGGTAAATATTGTAAGAAGAGATATACCAAAGCATCACAGAATTTTTACTGCTTTCCATCGAAAGCAACTCGTTGATGCCAAGAGGTTCTCAGAGAACTGTCAAAGAGAGGTTAGAATGAAAGTGACTAGATCACTTAAATTGATGAAGAGTGCAGCCATTCGCACCCGGAAACTAGCTAGAGACATGTTGCTGTTCTGGAAACGAGTAGATAAGGAGATGGCAGAAGTGAGGAAAAAAGAGGAGAAAGAAGCTGCTGAGGCTTTGAGGCGTGAACAGGAGCTTCGAGAAGCAAAGAGGCAACAGCAAAGGCTTAATTTCCTTATACAGCAAACTGAGCTGTACAGTCACTTTATGCAGAATAAGTCAAACCTACTGTCTTCTGAAGCGTTGCCTGTGGTAGATGAAAAAGCGGATGATCAGGATACACTGCATGGCTCTTCAGATGCCGGGCCTAGTGAGGAGGAAGATCCTGAAGACGCTGAACTGAAGAAGGAAGCTTTGATGGCTGCTCAAGAAGCAGTCTCTAAGCAGAGAATGATGACTCGTGCTTTTGATGATGAATGCTTGAGGCTGCGTCAGGCTGGTGAAACTGATGCACATTCACAGGAAGTTGCAGGAGCGAGTAACATTGATTTGCAAACCCCCTCAACCATGCCAGTGGCATCCACAGTTCGGACACCAGAATTGTTTAGAGGTACTCTTAAAGAATATCAACTAAAAGGTCTTCAGTGGCTAGTTAATTGTTATGAGCAGGGTCTGAATGGTATACTTGCTGATGAAATGGGACTTGGAAAGACCATCCAGGCCATGGCTTTTTTAGCCCATTTAGCTGAGGAGAAAAATATATGGGGACCATTTTTGATTATTGCACCTGCATCTGTATTAAACAATTGGAATGAGGAACTTGAGCGTTTCTGCCCTGAAATGAAAGTGCTTCCTTACTGGGGTGGGCTTCACGAGCGGACAGTGCTCAGGAAAAGTATTAACCCAAAGGATCTTTATCGTAGGGAAGCTAAGTTCCACATTCTCATCACAAGCTACCAGCTACTAGTATCTGATGATAAGTATTTTCGGCGTGTCAAATGGCAGTACATGGTGTTAGATGAAGCCCAGGCAATTAAAAGTTCAAACAGTATAAGATGGAGGACACTCCTGAGCTTTAATTGTCGAAATCGCCTGCTGCTGACTGGTACACCTATTCAAAATAACATGGCTGAGTTGTGGGCTCTTCTGCACTTTATTATGCCAACTTTATTCGATAGCCATGAGCAGTTTAATGAATGGTTTTCAAAAGGAATTGAGAACCATGCGGAACATGGAGGTACCTTGAATGAGCACCAACTTAACAGATTGCATTCAATTCTGAAGCCTTTCATGTTGCGACGAGTTAAAAAAGATGTAATATCTGAGCTGACTAAGAAGACAGAGGTTACAGTGCACTGTAAGTTGAGTTCTCGGCAGCAGGCTTTCTATCAAGCAATCAAGAATAAGATTTCTCTCGCTGAGTTGTTTGACAGTAATCGTGGGCAGCTCAATGAGAAGAGAATTCTGAATTTAATGAACATTGTTATTCAACTAAGAAAGGTTTGCAACCATCCAGAGTTGTTTGAGAGAAGTGAGGGAACCACATACTTCAACTTTGGAGAGATTCCAAATTCCCTTCCACCACCTCCATTTGGGGAGTTGGAGGACGTATACTATTCTGGAGGGCACAATCCCATATCATACAAGATACCAAAACTTGTCCACCAAGAAATCATGGAAGGTTCAAAAATGCTCAGTTCAGCTGTTGCTCGTGGTGTTAGCAGAGAATCCTTTCAGAAACATTTTAATATTTATAGCCCGGAAAATGTTTTTCAATCTATCTTCTCTCAAGGAAATAAATCAAATGGGTTATGTGTTGAAAGTGGAACTTTTGGTTTTACACATTTGATGGATTTGTGTCCACAAGAGGTGACATTTTTAGCTACTGGTTCTTTTATGGAGCGACTACTATTTTCTATGGTGAGATGGGAACAGAAATTTATCAATGAAGCTGTAGACTTTCTTACGGACACACTAGATAATGATCCTGAATGCAGTCACCTCGACAAAGGAAAAGTGAGGGCTGTTACACGAATGTTATTGGTGCCAACAAGATCTGAGACCAAGATTTTCCAAAGAAGATTTGCAACTGGGCCCAGCTATGCCCCTTTTGAGGCCTTGGTTGTCCCATGTCAGGATAGGATTTTATCCAACGCAAGGCTTCTTCACTCAGCATATACATATATCCCTCGGACTAGAGCTCCCCCAATTGGTGCTCACTGCTCCGATCGAAACTTCTCTTATAGAACAATTGAAGAATTACATGACCCTTGGGTTAAGAGGTTGTTTGTGGGATTTGCTCGTACATCTGAGTATAATGGACCTAGGATGCCAGATGGGCCTCCTCATCATTTAATAGAAGAGATTGATTCTGAGCTACCAGTTGTACAGCCTGCTCTTCAGTTAACCTACAAAATTTTAGGTTCTTCACCCCCCATGCGAAATTTTGACCCAGCGAAGTTGCTCACTGACTCTGGGAAGCTTCAAACACTTGATATATTGTTGAAACGCTTGCGAGCTGAAAATCATCGTGTTCTCTTGTTTGCTCAGATGACTAAGATGCTGAATATTCTTGAGGATTATATGAACTATAGAAAATATAGATATTTTAGACTTGATGGATCATCAGCTATTCAGGACCGTAGAGACATGGTCAGAGATTTCCAGCATAGGAATGATATTTTTGTTTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCTGCTGACACAGTAATTTTTTATGAGAGTGATTGGAATCCAACATTGGATCAACAGGCAATGGACAGGGCTCATCGATTGGGTCAGACAAAAGATGTTACTGTTTACCGACTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCTTAGAGCAAGTCAAAAAAGCACTGTACAGAACCTTGTCATGACTGGTGGTTCTGTCGGTGATCTTTTAGCTCCTGAGGATGTCGTATCTCTGCTGCTGGATGATGTGCAGTTGGAGCAGAAATTAAAGGAAATTCCTCTGCAGATAAAGGATAAGCAAAAGAAAAAACAACCTGTGAAGGGAATACGTGTAAATGAAGATGGTGATGCATCTCTAGAAGATCTAACAAACTCAGAAGTGCCGGGTACAGATAATGATATTTCTCTTGACCCAGAGGGATCAAAGTTCAGTAACAAAAAGAGAAAGGCTGCCTCTGACAGAAAAACTGCATCAAGGACCAAGAATTCCCAAAAGATGAGTGATTTAAATAGTACTATACCTATGGACAGTGAGTTGTATGATGCTAATCATACTGATCCACCGGCCCAGAAACCCAAGAGACTAAAGAAGGCGACAAAGAAGGTTGGGAATGAAAGGGTCGAAGACTCTTTTTCCGGTGGAGCTTCTGTTTTCCCGGAGCAGACCCAGTTTACCACTATCACGTGA 4578 0.4205 MDHRRQPKDSLSYSSLFNLESLMNFQLPQQDDDFDYYGNSSQDESRDSQGGAIANHSNGNMRGREVNLLKKRKWSQNSDDEDKGIFYGTHMTEERYRTMLGEHIQKYKRRYKDTSSSPAQNRVGAQIIKSNIGLKARKSGNEHRGGFHAVETTSEWPNDTNPQKPVNYREADFTQQYGPDRTVYEPASLDIGDGVTYKIPPTYDKLAPMLNLPSFSDIQVEEFYLKGTLDLGSLAAMMASDKRFGTRNRAGMGEALSQYESLQARLKAMSVSNLPHQFSLKVSDVGLNSSIPEGAAGSIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPSLIEKEETERIGKVWVNIVRRDIPKHHRIFTAFHRKQLVDAKRFSENCQREVRMKVTRSLKLMKSAAIRTRKLARDMLLFWKRVDKEMAEVRKKEEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSEALPVVDEKADDQDTLHGSSDAGPSEEEDPEDAELKKEALMAAQEAVSKQRMMTRAFDDECLRLRQAGETDAHSQEVAGASNIDLQTPSTMPVASTVRTPELFRGTLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLIIAPASVLNNWNEELERFCPEMKVLPYWGGLHERTVLRKSINPKDLYRREAKFHILITSYQLLVSDDKYFRRVKWQYMVLDEAQAIKSSNSIRWRTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTKKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKRILNLMNIVIQLRKVCNHPELFERSEGTTYFNFGEIPNSLPPPPFGELEDVYYSGGHNPISYKIPKLVHQEIMEGSKMLSSAVARGVSRESFQKHFNIYSPENVFQSIFSQGNKSNGLCVESGTFGFTHLMDLCPQEVTFLATGSFMERLLFSMVRWEQKFINEAVDFLTDTLDNDPECSHLDKGKVRAVTRMLLVPTRSETKIFQRRFATGPSYAPFEALVVPCQDRILSNARLLHSAYTYIPRTRAPPIGAHCSDRNFSYRTIEELHDPWVKRLFVGFARTSEYNGPRMPDGPPHHLIEEIDSELPVVQPALQLTYKILGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSAIQDRRDMVRDFQHRNDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDQQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGDLLAPEDVVSLLLDDVQLEQKLKEIPLQIKDKQKKKQPVKGIRVNEDGDASLEDLTNSEVPGTDNDISLDPEGSKFSNKKRKAASDRKTASRTKNSQKMSDLNSTIPMDSELYDANHTDPPAQKPKRLKKATKKVGNERVEDSFSGGASVFPEQTQFTTIT 1525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g2398 1525 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 602 773 IPR014001 -
Bisa03g2398 1525 FunFam DNA helicase INO80-like protein 1182 1432 - -
Bisa03g2398 1525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 574 818 IPR027417 -
Bisa03g2398 1525 CDD SF2_C_SNF 1202 1334 - -
Bisa03g2398 1525 PANTHER HELICASE SRCAP-RELATED 88 534 - -
Bisa03g2398 1525 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1214 1397 IPR001650 -
Bisa03g2398 1525 MobiDBLite consensus disorder prediction 1437 1458 - -
Bisa03g2398 1525 SMART ultradead3 586 781 IPR014001 -
Bisa03g2398 1525 SMART helicmild6 1240 1323 IPR001650 -
Bisa03g2398 1525 Pfam DNA-binding domain 350 479 IPR020838 GO:0003677
Bisa03g2398 1525 FunFam Putative DNA helicase INO80 562 840 - -
Bisa03g2398 1525 MobiDBLite consensus disorder prediction 1395 1525 - -
Bisa03g2398 1525 MobiDBLite consensus disorder prediction 30 63 - -
Bisa03g2398 1525 MobiDBLite consensus disorder prediction 30 62 - -
Bisa03g2398 1525 Coils Coil 427 466 - -
Bisa03g2398 1525 Pfam Helicase conserved C-terminal domain 1214 1323 IPR001650 -
Bisa03g2398 1525 Pfam SNF2-related domain 605 892 IPR000330 GO:0005524|GO:0140658
Bisa03g2398 1525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 820 1363 IPR027417 -
Bisa03g2398 1525 MobiDBLite consensus disorder prediction 491 517 - -
Bisa03g2398 1525 MobiDBLite consensus disorder prediction 1395 1414 - -
Bisa03g2398 1525 MobiDBLite consensus disorder prediction 491 507 - -
Bisa03g2398 1525 Gene3D - 562 843 IPR038718 -
Bisa03g2398 1525 Gene3D - 1182 1421 IPR027417 -
Bisa03g2398 1525 MobiDBLite consensus disorder prediction 1459 1475 - -
Bisa03g2398 1525 ProSiteProfiles DBINO domain profile. 355 480 IPR020838 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g2398 Bisa-ChrBisa03 35539676 35550535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g2398 611 903 RAD5 or RAD16-like Gene Family AT5G43530 29.499 6.04e-27 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bisa03g2398 SNF2_N 1.5e-67 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g2398 03 35539676 35550535 Bisa03g2398 03 35539676 35550535 ECH