Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g2389 ATGGGGAGAGGGAAGATTGAGATTAAGAAGATAGAGAACTTGAATAACAGGCAGGTCACGTTCTCCAAGCGACGAAACGGGTTGCTCAAGAAAGCGAAGGAGTTATCGGTTTTGTGTGATGCAGAGGTTGCAGTCATTGTATTCTCTAGCACAGGCAAACTCTATGAGTTTTCCAACACGAGCATGGAGCACACCCTTTCAAGATACACCAAAGGCCTGGTATTGGATTATGCAGAGCAACCTTGCGATGAGCCACCAACTGAGGATACAAAGCCTGACACAAACCTTCTCAAGGATGAACTAAGAAGGCTTCGTTTAGCATACTCAAGGATGATGGGAAAGGAGCTTGACGGATTGAAATTCAAAGAGCTGCAGAACCTAGAAAATCAGCTGACTGAAGGGATACTATCTGTTAAAAACAAGAAGGAGCAAGTACTCGTAGAGCAACTTAGGAGGTCCAGATTACAGGAGCAGCAAACCTTGTTGGAGAATGAAGCTCTGCGCAAACAAATTGAGGAGATGCAGAATAAATCACACACACACTTTCATGATTTGAATGCTTTGGACAGGAGCTTCTCCATCAACAACATTTCCAACCCCTTTTACAACTCTGCCTCTAACGGAAAGGATGACCTCTCTGACACTTGCTTGCAGTTAGGGTTATCCACTGATTTTGGTCGCAAGAGGAAATCATTGAAAATAGAACCTTGCAATGACTCAGCAGGGACTCAACTAGCCTCAGGATTGGAAAACGTTTCCTAG 762 0.4423 MGRGKIEIKKIENLNNRQVTFSKRRNGLLKKAKELSVLCDAEVAVIVFSSTGKLYEFSNTSMEHTLSRYTKGLVLDYAEQPCDEPPTEDTKPDTNLLKDELRRLRLAYSRMMGKELDGLKFKELQNLENQLTEGILSVKNKKEQVLVEQLRRSRLQEQQTLLENEALRKQIEEMQNKSHTHFHDLNALDRSFSINNISNPFYNSASNGKDDLSDTCLQLGLSTDFGRKRKSLKIEPCNDSAGTQLASGLENVS 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g2389 253 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bisa03g2389 253 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bisa03g2389 253 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Bisa03g2389 253 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bisa03g2389 253 Coils Coil 124 144 - -
Bisa03g2389 253 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa03g2389 253 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa03g2389 253 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa03g2389 253 FunFam MADS-box transcription factor MADS-MC 13 84 - -
Bisa03g2389 253 Pfam K-box region 91 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa03g2389 253 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Bisa03g2389 253 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Bisa03g2389 253 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa03g2389 253 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bisa03g2389 253 Coils Coil 157 177 - -
Bisa03g2389 253 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g2389 Bisa-ChrBisa03 35370030 35374237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g2389 1 247 MADS-box Gene Family AT5G13790 45.490 2.41e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa03g2389 K-box 9.1e-15 No_clan