Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g2362 ATGGGAACTCCAGAATTCCCAGATCTTGGAAAGCACTGTGCCGTTGATGATTGCAAGCTCATTGATTTTTTGCCCTTCACGTGCGATCGTTGCAATCAGGTATATTGTTTGGAGCACAGAAGTTATATTAAACATCAATGTCAGAAAGCTGACAAATTAGATGTCACTGTTGTCATATGTCCACTTTGTGCCAAAGGAGTTCGCCTTATACCTGATGAAGATCCAAACATAACTTGGGAGAATCATGTCAACACTGACTGTGACCCATCAAATTATGAGAGAGCTGTGAAGAAGAAGAAATGTCCTGCCCCTGGATGCAGAGAGATCTTAGTGTTCTCAAACACAATCAAATGCAGGGACTGCTTGGTAGACCATTGTTTGAAGCATCGGTTTGGCCCCGATCACACGTGTCCTGGACCGAAAAGCTTGGAAACAAGTTTTTCATTTATGAATATTTTGAGCAGGAGTAGAAAAGAGGAGTCAAAGCCAAATAGATCTTCACCTACATCTTCATCCAAATGGGCTTCAAGCTTTCGTAACGTGGCTTCAAATATACGAGCTTCAGCCGAAGCCAGCATGTCAAAATTGGGTACCGAAATTAACCAAGTTTGGCAAGCAGCAAGGGATGGGACGGGACAGAGCAGTGGCAGTGTCAATGGAAACGGCCAAATGGAGTTAGAGCAATGCCCTCAGTGTGGTGCAAAGTTTTCCTCAGTCACTACTTTGGTGGATCATGTGCAAAAAGTTCATGAAAGGGGCAGCAACAGATCCGGGGGGGCGACAAAGGTGACAATAGATGTGTGTCCTAAGTGTAGCAGAGGATTTCGAGATCCAGTGTCCCTTGTGGAGCATGTTGAGAGGGATCACGGTGGTAGTTCCAGAGCGTAG 888 0.4516 MGTPEFPDLGKHCAVDDCKLIDFLPFTCDRCNQVYCLEHRSYIKHQCQKADKLDVTVVICPLCAKGVRLIPDEDPNITWENHVNTDCDPSNYERAVKKKKCPAPGCREILVFSNTIKCRDCLVDHCLKHRFGPDHTCPGPKSLETSFSFMNILSRSRKEESKPNRSSPTSSSKWASSFRNVASNIRASAEASMSKLGTEINQVWQAARDGTGQSSGSVNGNGQMELEQCPQCGAKFSSVTTLVDHVQKVHERGSNRSGGATKVTIDVCPKCSRGFRDPVSLVEHVERDHGGSSRA 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g2362 295 Gene3D Classic Zinc Finger 199 294 - -
Bisa03g2362 295 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 255 - -
Bisa03g2362 295 Gene3D - 81 151 IPR035896 -
Bisa03g2362 295 Pfam AN1-like Zinc finger 101 140 IPR000058 GO:0008270
Bisa03g2362 295 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Bisa03g2362 295 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Bisa03g2362 295 Gene3D - 2 57 IPR035896 -
Bisa03g2362 295 SUPERFAMILY AN1-like Zinc finger 58 142 IPR035896 -
Bisa03g2362 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 266 294 IPR013087 -
Bisa03g2362 295 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Bisa03g2362 295 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Bisa03g2362 295 ProSitePatterns Zinc finger C2H2 type domain signature. 229 250 IPR013087 -
Bisa03g2362 295 MobiDBLite consensus disorder prediction 155 175 - -
Bisa03g2362 295 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Bisa03g2362 295 SMART c2h2final6 266 289 IPR013087 -
Bisa03g2362 295 SMART c2h2final6 227 250 IPR013087 -
Bisa03g2362 295 Pfam C2H2-type zinc finger 228 250 - -
Bisa03g2362 295 FunFam AN1-type zinc finger protein 2B isoform X1 3 64 - -
Bisa03g2362 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 227 250 IPR013087 -
Bisa03g2362 295 SUPERFAMILY beta-beta-alpha zinc fingers 228 285 IPR036236 -
Bisa03g2362 295 ProSitePatterns Zinc finger C2H2 type domain signature. 268 289 IPR013087 -
Bisa03g2362 295 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g2362 Bisa-ChrBisa03 34708233 34710634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g2362 1 295 C2H2 Transcription Factor Family AT2G41835 65.217 2.89e-129 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa03g2362 zf-AN1 2.4e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g2362 03 34708233 34710634 Bisa07g3089 07 65039136 65043374 CCT
Bisa03g2362 03 34708233 34710634 Bisa03g2362 03 34708233 34710634 ECH