Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g2354 ATGGGTAATTTTTGTGTAACTCCGTCGAAATCTCAGGCGAAAAAGGAGAAGAAGAAGAAGAAGCAGCAGCTGAAGGAAAATCCATTCTCGAGCGACACCGTGAACTACAAGGGTAACCCTGGAAGCAAGCTCTCCGTTTTGAAGAATCCCACGGGTCGCGACATCGGGCTCAGATACCAGCTGGGTGAAGAGCTTGGAAGGGGAGAATTCGGAATAACTTACCAATGCACTGATAGAGAGACGGGTGAAGTTTTCGCTTGCAAATCGATATCGAAGAAGAAGCTGCGAACAGCCATTGATATCGAGGACGTGAGGAGAGAGGTTGAGATCATGAATCATATGCCACATCACCCAAACATTGTGACCTTAAAGGACACCTATGAGGACGACAACGCGGTCCATCTTGTGATGGAATTGTGCGAAGGAGGAGAATTATTCGATCGGATCGTGGCGCGTGGGCACTATACCGAACGGGCGGCCGCAGTCGTCACGCGGACGATAGTCGAAGTTGTGCAGATGTGCCACAAACATGGGGTGATGCATCGGGATCTCAAACCAGAGAACTTCTTGTTTGGAAACAAGAAGGAAACAGCACCCTTGAAGGCTATTGATTTTGGACTGTCAGTTTTCTTTAGACCTGGTGAAAAATTTAATGAAATAGTTGGAAGTCCATATTACATGGCCCCTGAGGTATTAAAACGAAATTATGGTCAGGAAGTAGATATATGGAGTGCTGGGGTCATTCTGTACATCTTACTTTGTGGTATCCCACCATTTTGGGCAGAAACTGAACAGGGAGTTGCACAAGCAATTATACGATCTGTTATTGATTTTAAAAGGGACCCGTGGCCAAAAGTTTCTGATAGTGCAAAAGACCTTGTGAAAAAGATGCTTAATCCTGACCCAAGGCGGCGACTTTCTGCAGAGGAAGTGTTAGCTCATCCATGGTTGCAGAATGCAAAGAAAGCTCCTAATGTTTCATTAGGAGAAACAGTTAGGGCAAGGCTTAAACAATTCTCTGTGATGAACAAGCTTAAGAAAAGAGCTCTGAGGGTGATTGCAGAGCATTTGTCAGTAGAAGAAGTTGCTGGAATAAAAGAGGGATTCCGGCTGATGGATACAGGCAGTAGAGGCAAAATTAACTATGATGAGCTACGAGTAGGGTTGCAAAAGCTAGGCCATCAAATGTCTGATGCTGATGTTCAAATTCTGATGGAAGCAGGTGATACAGATAAAGATGGACACTTAGACTATGGAGAATTTGTTGCCATTTCTGTTCATTTGAGAAAGATGGGCAATGATGAGCACCTTCGAAAAGCCTTCCAATTCTTTGATCAGAATAAAAGTGGGCATATAGAAATTGAGGAACTCCGCAGTGCCTTGGCTGATGAAGTTGATGTAAACAATGAAGAAGTGATTAAGGCAATTATGCATGATGTGGACACAGATAAGGATGGAAGAATAAGTTATGAGGAATTTGCTGCAATGATGAAGGCTGGCACAGATTGGAGGAAAGCATCGAGGCAGTATTCTCGAGAGAGGTTTACTAGTCTCAGTCTGAAACTAATGAGGGACGGATCCTTGGAAGTAAACAACGACAACCAATGA 1608 0.4409 MGNFCVTPSKSQAKKEKKKKKQQLKENPFSSDTVNYKGNPGSKLSVLKNPTGRDIGLRYQLGEELGRGEFGITYQCTDRETGEVFACKSISKKKLRTAIDIEDVRREVEIMNHMPHHPNIVTLKDTYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAVVTRTIVEVVQMCHKHGVMHRDLKPENFLFGNKKETAPLKAIDFGLSVFFRPGEKFNEIVGSPYYMAPEVLKRNYGQEVDIWSAGVILYILLCGIPPFWAETEQGVAQAIIRSVIDFKRDPWPKVSDSAKDLVKKMLNPDPRRRLSAEEVLAHPWLQNAKKAPNVSLGETVRARLKQFSVMNKLKKRALRVIAEHLSVEEVAGIKEGFRLMDTGSRGKINYDELRVGLQKLGHQMSDADVQILMEAGDTDKDGHLDYGEFVAISVHLRKMGNDEHLRKAFQFFDQNKSGHIEIEELRSALADEVDVNNEEVIKAIMHDVDTDKDGRISYEEFAAMMKAGTDWRKASRQYSRERFTSLSLKLMRDGSLEVNNDNQ 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g2354 535 Pfam EF-hand domain pair 365 424 IPR002048 GO:0005509
Bisa03g2354 535 Pfam EF-hand domain pair 435 498 IPR002048 GO:0005509
Bisa03g2354 535 ProSitePatterns EF-hand calcium-binding domain. 445 457 IPR018247 -
Bisa03g2354 535 ProSiteProfiles EF-hand calcium-binding domain profile. 432 467 IPR002048 GO:0005509
Bisa03g2354 535 MobiDBLite consensus disorder prediction 27 46 - -
Bisa03g2354 535 ProSiteProfiles EF-hand calcium-binding domain profile. 468 503 IPR002048 GO:0005509
Bisa03g2354 535 CDD STKc_CAMK 58 316 - -
Bisa03g2354 535 SUPERFAMILY EF-hand 346 523 IPR011992 -
Bisa03g2354 535 PANTHER SERINE/THREONINE-PROTEIN KINASE 18 493 - -
Bisa03g2354 535 SMART serkin_6 59 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa03g2354 535 FunFam calcium-dependent protein kinase 13 145 325 - -
Bisa03g2354 535 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Bisa03g2354 535 ProSitePatterns Protein kinases ATP-binding region signature. 65 88 IPR017441 GO:0005524
Bisa03g2354 535 ProSitePatterns EF-hand calcium-binding domain. 409 421 IPR018247 -
Bisa03g2354 535 MobiDBLite consensus disorder prediction 1 49 - -
Bisa03g2354 535 ProSiteProfiles Protein kinase domain profile. 59 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa03g2354 535 SMART efh_1 472 500 IPR002048 GO:0005509
Bisa03g2354 535 SMART efh_1 436 464 IPR002048 GO:0005509
Bisa03g2354 535 SMART efh_1 364 392 IPR002048 GO:0005509
Bisa03g2354 535 SMART efh_1 400 428 IPR002048 GO:0005509
Bisa03g2354 535 ProSitePatterns EF-hand calcium-binding domain. 481 493 IPR018247 -
Bisa03g2354 535 Pfam Protein kinase domain 59 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa03g2354 535 ProSiteProfiles EF-hand calcium-binding domain profile. 396 431 IPR002048 GO:0005509
Bisa03g2354 535 ProSiteProfiles EF-hand calcium-binding domain profile. 360 395 IPR002048 GO:0005509
Bisa03g2354 535 FunFam Calcium-dependent protein kinase 7 326 501 - -
Bisa03g2354 535 Gene3D - 326 500 - -
Bisa03g2354 535 Gene3D Phosphorylase Kinase; domain 1 61 144 - -
Bisa03g2354 535 SUPERFAMILY Protein kinase-like (PK-like) 58 326 IPR011009 -
Bisa03g2354 535 FunFam Calcium-dependent protein kinase 1 61 144 - -
Bisa03g2354 535 CDD EFh 436 498 IPR002048 GO:0005509
Bisa03g2354 535 Gene3D Transferase(Phosphotransferase) domain 1 145 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g2354 Bisa-ChrBisa03 34542482 34546324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g2354 1 534 EF-hand Containing Proteins AT5G19450 77.799 0.0 872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Bisa03g2354 Pkinase 1.2e-77 CL0016