Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g2340 ATGAATCACTTGACAATTGAGACTGAAGATTCTTTTGCAAGCTTGCTTGAGCTAGCGGCGAATAATGATACTGAGGGTTTTCGGAGATTGATTGAGCGTGATCCAGCATGCGTCGATGAGGTTGGGTTATGGTATGGCCGTGGAAAGGGTTCAAAGCTGATGGTCAACGAGCAGAGAACACCTCTGATGGTTGCCGCCACTTATGGTAGCATTGATGTCATGAAACTGATTCTATTCTTATCTGATGCTGACATTAATTGTACTTGTGGCCTTGACGAGAGCACTGCCCTTCACTGTGCGGCATCGGGCGGGGCTGCTAATGCCGTTGATGTTGTAAAACTGCTCTTATCAGCAGGTGCTGACCCAAAGTCCGTGGATGCCAATGGTCATCGTCCAGTTGATGTTATCGTTGTTCCTCCCAAGCTTGATCATGTTAAAAACAGTCTTGAAGAAATTCTTCAAACTGATGGCTCCATGGCAGGGTTTAATCTCAGCGTTATCACCACTACAAATACATATTCTTCACCTTTACCAATTTCCCCAGACAAGGAGTCTTCATCTCCTGCATCAGATATCCAATTGAAGTCAAAGTCAAATGATGCCTCTGTTTCTTCCGCACCAGAGAAGAAAGAATATCCTGTCGACCAATCTCTTCCAGACATCAAGAACAGCATATATTCAACTGATGAATTCCGAATGTATTCTTTCAAGGTTCGACCTTGTTCACGTGCTTATTCTCATGATTGGACTGAATGCCCTTTTGTCCATCCTGGGGAGAATGCCCGAAGAAGGGACCCAAGAAAGTTCCATTATAGTTGTGTCCCCTGTCCTGATTTTAGGAAGGGGGCTTGCCGACGTGGTGATATGTGTGAATATGCACATGGGGTTTTTGAATGCTGGCTGCATCCAGCCCAATATCGAACCCGGCTTTGCAAAGATGGGACAAACTGCTCTAGAAGAGTTTGCTTCTTTGCCCATACTGCTGAGGAGCTTCGGCCATTATATGTTTCCACAGGTTCTGCTGTTCCCTCTCCTCGCTCAAGCACATCCGCAATGGATTTTGCTACAGCTATGAGCATGTTACCTGGCTCCCCTTCCTCAATGTCTGCCATTTCTCCTTCACCTTTCACTCCGCCTATGTCTCCATCTGCTAATGGCATGTCACACTCTTCTCTTGCTTGGCCACAACCCAATGTCCCACCTTTGCATTTGCCAGGAAGTAATCTTCATTCCAGTCATTTGAGATCTTCGGTAAATGCTAGAGATGTTCGTGTGGAAGACTTTGATTTATTGCCAGACTATGATGTTCAGCAACAGCAGCTCCTTAACCTTAATGAGTTCTCTTATCTTTTGCCACGACCTATGAATTCTAATACCATAAATTGTTCAGTTCGTATGAAGACCCTGGCCCCTTCAAACCTTGATGATCACTTTTCTGCCGAGAACTCCTCCCCTCGGTTTGCTGATCCAGCATTGGCTTCAGCTGTTTACTCCCCAACGCACAGAACAACTGTCCTTAATCAATTTCAGCAGCAGCAAAGCTTGCTATCACCTGTGAAAACAAAATTTCCTTCTAAGAATGTTGAGCATCCTTTATTGCAGGCCTCTTTATCAGGAAGGATGTCTCCACGCAATGTTGAACCCATTTCACCAATGAGTTCCAGAATTTCTATGCTGGCTCAAGCAGAGAAGCAGCAACAATTTCGTAGCCTTAGCTCTCGGGAACTTGGCTCCAACTCTGCTGCTGCTGTTTCTGGGTCCTCAATCAATTCTTGGTCAAAATGGGAGTCCCCTAATGATAAGTTGGATTGGGCTGTTAGTACAGATGAATTGGGTAATCTCCATAGATCGTCTTCATTTGAACTTGGGAACAATGGTGAGGCGCCTGATTTATCATGGGTGCAGTCTCTTGTAAAAGAATCATCTACTGAGATTAAAGAATCGTCAAAAGCTGTGCCGGGTGTTGCAGTGGTTGGATCCTCCTGTGAGGGATCAAATATGCGCACCCAAATCGAGCCTGTGGATCATGCTGTATTGGGAGCATGGCTCGAACAAATGCAGCTTGATCATCTTGTGGCTCAGCAAAATTGA 2091 0.4534 MNHLTIETEDSFASLLELAANNDTEGFRRLIERDPACVDEVGLWYGRGKGSKLMVNEQRTPLMVAATYGSIDVMKLILFLSDADINCTCGLDESTALHCAASGGAANAVDVVKLLLSAGADPKSVDANGHRPVDVIVVPPKLDHVKNSLEEILQTDGSMAGFNLSVITTTNTYSSPLPISPDKESSSPASDIQLKSKSNDASVSSAPEKKEYPVDQSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSAMDFATAMSMLPGSPSSMSAISPSPFTPPMSPSANGMSHSSLAWPQPNVPPLHLPGSNLHSSHLRSSVNARDVRVEDFDLLPDYDVQQQQLLNLNEFSYLLPRPMNSNTINCSVRMKTLAPSNLDDHFSAENSSPRFADPALASAVYSPTHRTTVLNQFQQQQSLLSPVKTKFPSKNVEHPLLQASLSGRMSPRNVEPISPMSSRISMLAQAEKQQQFRSLSSRELGSNSAAAVSGSSINSWSKWESPNDKLDWAVSTDELGNLHRSSSFELGNNGEAPDLSWVQSLVKESSTEIKESSKAVPGVAVVGSSCEGSNMRTQIEPVDHAVLGAWLEQMQLDHLVAQQN 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g2340 696 Gene3D - 272 333 - -
Bisa03g2340 696 Pfam Ankyrin repeats (3 copies) 19 124 IPR002110 GO:0005515
Bisa03g2340 696 MobiDBLite consensus disorder prediction 175 214 - -
Bisa03g2340 696 SMART ANK_2a 57 87 IPR002110 GO:0005515
Bisa03g2340 696 SMART ANK_2a 92 124 IPR002110 GO:0005515
Bisa03g2340 696 MobiDBLite consensus disorder prediction 175 205 - -
Bisa03g2340 696 ProSiteProfiles Zinc finger C3H1-type profile. 275 297 IPR000571 GO:0046872
Bisa03g2340 696 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Bisa03g2340 696 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Bisa03g2340 696 SUPERFAMILY Ankyrin repeat 12 137 IPR036770 -
Bisa03g2340 696 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Bisa03g2340 696 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Bisa03g2340 696 Gene3D - 4 144 IPR036770 -
Bisa03g2340 696 FunFam Zinc finger CCCH domain-containing protein 66 228 296 - -
Bisa03g2340 696 PANTHER UNKEMPT FAMILY MEMBER 17 640 IPR045234 -
Bisa03g2340 696 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 295 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g2340 Bisa-ChrBisa03 34293280 34295370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g2340 7 689 C2H2 Transcription Factor Family AT5G12850 52.774 0.0 674
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa03g2340 Ank_2 3.6e-09 CL0465