LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa03g2324	ATGGAGACGGATAATGGTGAAACCAAGTCAAAGATGGAACACTATGAGGTGATAGAGCAAATTGGGAGGGGAGCATTCGGGTCCGCCTTTCTCGTTCTCCACAAGTCTGAGAAAAAGAAGTATGTGCTGAAGAAGATTCGCTTGGCCAAGCAAACCGAGAAGTTCAAACGTACAGCGCATCAAGAGATGAACCTGATTGCAAAACTAAATAACCCATATATTGTGGAGTACAAAGATGCTTGGGTGGAAAAGGAGGACCACATATGCATTATAACTGGTTATTGTGAAGGAGGTGACATGGCTGGGATCATAAAGAAAGCCCGAGGATCTTTCTCTGAGGAGAAAATCTGCAAATGGCTGACTCAATTATTGCTGGCTGTGGACTACCTGCACTCTAATCGCGTACTCCACAGAGATCTTAAGTGTTCCAACATTTTCCTCACCAAAGACAGTGACATCCGGCTTGGTGACTTTGGTCTTGCAAAGCTACTTAACACAGAAGACCTTGCTTCCTCGGTTGTCGGAACTCCAAACTACATGTGTCCTGAGCTCCTTGCTGATATACCTTATGGTTATAAATCTGATATATGGTCGCTTGGTTGTTGCATGTTTGAAATTGCTGCACATCAACCGGCATTTCGTGCTCCAGACATGGCTGGACTTATCAATAAGATAAATAGATCCTCCATTTCTCCACTGCCAATTGTTTATTCTTCCACATTGAAACAAATTATCAAGAGCATGCTGAGGAAGAACCCAGAAAACAGACCAACAGCACTGGAATTGTTAAGGCATCCTCATTTACAACCATTTGTCCTCCGCTGTCGCAATGCTTCGGCTGTCCTTCTTCCAATAAAACCCGTAACTAATTCAAAGGATAAAACAAAAAGATCCTATAGATCTAGTGGTGGCAAAGACCATAGGGACAAAGAAGTGGGATTAGCAAATCATCTGGAGCAGGTTCATCCATTTGAGGGAAATGGCGATGTACATCCCAGCATTCTGCCTAACGATGGCAGACGAAGAGTCTCAATTGGTGTTGAAGACAACCTTGAGACCAAGATGGTTGATCGCACCAGCTACATAGTGGAATCATCTAGTATCAGTGGCTCAAAAGACGGGTCTACAACTTCCGAATCAACTAGTGGCAGTGTGTTCAAGGAAGCTGACTTTAAAAATAGTCCTGCAAGTGAAACAGCTGATAATGAAATTACATCAAAGACAATGCCAGAATCTAAGAATGAAGAACAAGGATTGAATGCTGAACACTTGCAAAAATCAGAGAGGGTTGACGTAAAAGCAGTAACCACAAAACTTGAAGATGCTTGTGATAAAGCTATGGCGCAAAGGAAAGATACGGTGCCTGAGAAGTCTAAGAAATCAATGACATCCAGTGCAGGAAGCACTGACAAAGATGGGTCCCTTGACGAGGAAACATTAACACCACCAACTATGCAGCCTATTAGGGTCAAACAGGACACTGAATCTGGAAGTTGCTTGAAGAAACGGGAAAATACCACTGCATTTACAGAAGGCTCTCACTCGGACTGTTTGTCTTCCGAGAGTAATGATAAACTTCAAGTTAAAGATGAAGGTCAAGTAAAAACACCTGACATCAGTTGTTCATTGCGTAAAGAAAATAAAAGTGCTTGTGTGGTTGATCAGACACCAAGTGAGCTTTCATTAAGTACACTTACTGCAGTAGGTAGTGATGAAACCAAGAATGTGCTGGACCGTCCATGCCAGCAAAGAGCTGATGCTCTTGAGTCCCTGCTTGAGTTGTGTGCTCAGTTACTTAAGCAAGACAAACTTGATGAGCTTGCTGGTGTGCTAAGACCATTTGGGCATGAAGCTGTCTCGTCCAGAGAAACAGCAATATGGTTGACGAAGACCCTCATGGCAGCACAAAAATTTAACCCAGAAAACTAG	1929	0.4303	METDNGETKSKMEHYEVIEQIGRGAFGSAFLVLHKSEKKKYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKEDHICIITGYCEGGDMAGIIKKARGSFSEEKICKWLTQLLLAVDYLHSNRVLHRDLKCSNIFLTKDSDIRLGDFGLAKLLNTEDLASSVVGTPNYMCPELLADIPYGYKSDIWSLGCCMFEIAAHQPAFRAPDMAGLINKINRSSISPLPIVYSSTLKQIIKSMLRKNPENRPTALELLRHPHLQPFVLRCRNASAVLLPIKPVTNSKDKTKRSYRSSGGKDHRDKEVGLANHLEQVHPFEGNGDVHPSILPNDGRRRVSIGVEDNLETKMVDRTSYIVESSSISGSKDGSTTSESTSGSVFKEADFKNSPASETADNEITSKTMPESKNEEQGLNAEHLQKSERVDVKAVTTKLEDACDKAMAQRKDTVPEKSKKSMTSSAGSTDKDGSLDEETLTPPTMQPIRVKQDTESGSCLKKRENTTAFTEGSHSDCLSSESNDKLQVKDEGQVKTPDISCSLRKENKSACVVDQTPSELSLSTLTAVGSDETKNVLDRPCQQRADALESLLELCAQLLKQDKLDELAGVLRPFGHEAVSSRETAIWLTKTLMAAQKFNPEN	642

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa03g2324	642	ProSiteProfiles	Protein kinase domain profile.	15	268	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa03g2324	642	MobiDBLite	consensus disorder prediction	501	522	-	-
	Bisa03g2324	642	FunFam	Serine/threonine-protein kinase Nek6	1	94	-	-
	Bisa03g2324	642	MobiDBLite	consensus disorder prediction	479	493	-	-
	Bisa03g2324	642	Gene3D	Transferase(Phosphotransferase) domain 1	97	321	-	-
	Bisa03g2324	642	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	135	147	IPR008271	GO:0004672\|GO:0006468
	Bisa03g2324	642	ProSitePatterns	Protein kinases ATP-binding region signature.	21	44	IPR017441	GO:0005524
	Bisa03g2324	642	MobiDBLite	consensus disorder prediction	446	531	-	-
	Bisa03g2324	642	SUPERFAMILY	Protein kinase-like (PK-like)	12	303	IPR011009	-
	Bisa03g2324	642	MobiDBLite	consensus disorder prediction	365	388	-	-
	Bisa03g2324	642	Pfam	Protein kinase domain	15	267	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa03g2324	642	SMART	serkin_6	15	268	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa03g2324	642	MobiDBLite	consensus disorder prediction	395	415	-	-
	Bisa03g2324	642	MobiDBLite	consensus disorder prediction	365	422	-	-
	Bisa03g2324	642	FunFam	serine/threonine-protein kinase Nek6 isoform X2	95	282	-	-
	Bisa03g2324	642	Gene3D	Phosphorylase Kinase; domain 1	1	94	-	-
	Bisa03g2324	642	CDD	STKc_Nek	14	268	-	-
	Bisa03g2324	642	PANTHER	SERINE/THREONINE-PROTEIN KINASE NEK	12	592	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa03g2324	Bisa-ChrBisa03	34056877	34061615	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa03g2324	21	269	MAP Kinase Kinase Kinase	AT1G53570	32.677	4.59e-38	146

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NEK	Bisa03g2324		Pkinase	5.7e-68	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bisa03g2324	03	34056877	34061615	Bisa07g3110	07	65374494	65379885	CCT
	Bisa03g2324	03	34056877	34061615	Bisa03g2324	03	34056877	34061615	ECH