Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g2312 ATGGCTTCTCTCTCTGTAGTCTGTACTTTGTTATTGGCTGACCTTGCCGCAGAGGAAGATAGATATTGTTTTCTCTGCTTCTTCTTTCTGTCTCTCTCTCTCTCTCCCTCTTTCGGTTCTCTCCCATTCGAATTGCTTCCTCAGCAAGGTCTTATCCCACCCTGCTTAGGAACTAAGCTGAAGGAAAAAGTTCTCAGAATTTTCTCGGATAAAGCGGTCAATCCTTTTCGCTATGATTCCCGCGCTTCTGTTATCGGCCTGACTTCATCTTTTTTCCCTACCTGCTGGCTAAAAGCTATAATAGCAAGTTACAGAGTAAGGCCAGAGGAGCATTATATGGATTCCAATTCCCTTCACAATTATCAAATCCATCAGCCCAATTCTGGCTTACTTCGGTTTCGCTCTGCCCCAACTTCTCTTCTTGCGAATTTCACTGAAGCCCTTGATTCCAATATCAATAAGGGCAATAATCCATGGGAGAGTTCTGAATCCGACAGATTAATTTCTGGATTCGTAAATAACAACGATACCGATTCGTCTAGTTTCCACGAATTTGAAGCCAAACCGCATAAACCATCCGCGGAGGCAGCTCTGGACCTTATGAACTCCCAGCAAGGCTATAATGGTTTGCCTCCTCACTATCCAACGCATAATTCCACTGCAAGTTCTGTCATGGATACTTCATATGGACTGGCGGCTTCACTGGGAATGGATCACCAAACGCAACCTAAAAGCTTCACTTCGAATCTTCTCAGGCAAAGCAGCTCCCCTGCTGGGCTTTTCTCCAACATTTCCTTTCCAAATGGGTATGCCACACTGAAAGGTGTTGGAAACTATGGTAGGGCGAATGGCTGTAATGGTGAAGTGAATCCGTCTATGAGCAGATTGAAGAATCAGTTTAGCTTGTCAAGAAGTGGTTCTTCCGTGGGAATGTTGTCAAAAATCTCTGAAATAGAGAGTGATAGCATTGGAGCAACTAATCCCGACGATGGCAGGTTGGGATCTAGCAATGGTTATGGCCCTGGATTTCTGTATAGTTCCTGGAATGACACGTCCCATCTCTCCGAAAATCTCACTGGCTTGAAAAGAGGACAAAGTAACAATGAGAAGTTATTTTCTAATGCCCAGAATGGACAGCTAGGAAACCGGGTTCATACACTATCTCATCACTTGAGTTTGCCAAAACCTTCAGCAGATATGGGTGCTATGGAGAAGTTCCTTCAATTCCCAGATTCCGTTCCTTGTAAAATCAGAGCAAAGCGAGGCTGCGCCACTCATCCTCGAAGCATTGCAGAAAGGGTACGAAGAACTCGGATCAGTGAACGGATGAGAAAATTACAAGAGCTCGTCCCGAACATGGACAAGCAAACAAACACGGCAGACATGTTGGACTTGGCTGTTGAGTACATTAAAGATCTTCAGAAACAATTTAAGACGCTGAGTGAAAAACGGGCAAACTGCAAATGTATGAGCATGTAA 1479 0.4442 MASLSVVCTLLLADLAAEEDRYCFLCFFFLSLSLSPSFGSLPFELLPQQGLIPPCLGTKLKEKVLRIFSDKAVNPFRYDSRASVIGLTSSFFPTCWLKAIIASYRVRPEEHYMDSNSLHNYQIHQPNSGLLRFRSAPTSLLANFTEALDSNINKGNNPWESSESDRLISGFVNNNDTDSSSFHEFEAKPHKPSAEAALDLMNSQQGYNGLPPHYPTHNSTASSVMDTSYGLAASLGMDHQTQPKSFTSNLLRQSSSPAGLFSNISFPNGYATLKGVGNYGRANGCNGEVNPSMSRLKNQFSLSRSGSSVGMLSKISEIESDSIGATNPDDGRLGSSNGYGPGFLYSSWNDTSHLSENLTGLKRGQSNNEKLFSNAQNGQLGNRVHTLSHHLSLPKPSADMGAMEKFLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQFKTLSEKRANCKCMSM 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g2312 492 Gene3D - 424 491 IPR036638 GO:0046983
Bisa03g2312 492 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 426 488 IPR036638 GO:0046983
Bisa03g2312 492 Coils Coil 470 490 - -
Bisa03g2312 492 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 136 487 - -
Bisa03g2312 492 FunFam Transcription factor bHLH130 family 424 492 - -
Bisa03g2312 492 Pfam Helix-loop-helix DNA-binding domain 428 474 IPR011598 GO:0046983
Bisa03g2312 492 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 423 473 IPR011598 GO:0046983
Bisa03g2312 492 SMART finulus 429 479 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g2312 Bisa-ChrBisa03 33787452 33790045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g2312 113 479 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 48.329 5.97e-92 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bisa03g2312 HLH 4.3e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g2312 03 33787452 33790045 Bisa03g2312 03 33787452 33790045 ECH