Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g2293 ATGTGTGGCGCCCAGGCGCCAGACCCGAATGCAACGCTCACCAGTCACTGCATAGCCACCTTGTGTATTGCTGAGGGGGCGAATAGGAGCCAAACCCGAAACCAGAAAAAACAACAAATGGATGATCTGAAAAAGAGAAAGCTAGAAGAGGCCGACGAGGTTTCTTCTAAGGAAGACCTTCGCTTTCTGCTTGACCCGCTAGCCAAACCCCACCTTATTGATCTCCTCACTAAACTAGGGTCCCAATATCCTTCAATTGCAGAAGAAATAAAAAGTATTGCAAGTCCAGATCCTGTCCACCGAAAGCTTTTTGTTCGTGGCTTGGCCTGGAATACCACTCTAGAAACCTTGTCTGTTGCATTTCAAGAGCATGGAGAAATTGAGGAAGGTGCTGTGATTTATGACAAAGCAACGGGAAAATCCCGTGGCTATGGTTTCATCACTTACAAACATATGGAATCAGCTCGTAATGCATTAAGAGCACCTAACAAGTTAATTGATGGCAGAATGGCTGTCTGTAATTTAGCCTGTGAGGGCCGAAGCGGAGCAAGTAATGCCCTTGATCTTTCCCTGAGGAAGCTGTACATTGGAAGCTTATCACCAGAAGTCACTAGTGAAATGTTGCTTAACTTTTTTGGGAGGCATGGGGAAATAGAGGAAGGCTCAGTTGCATATGACAAAGATACAAATGAATCTCGTGGTTTTGGCTTTATTACATACAAGTTAGCGAAGGCTGCAATGAAGGCCATAGATGATTCAGAAAAGACGCTTGGGGGCAGGAATATAATTATAAAATACGCTGATTTCCACAAGTGCAAAACAGGGCTGCCAGCATTACCTGCAGGAGTAGTTCCAGTGACAGGCTTACCTATGGCCCCAGGATATGCACAGGTGCAGCCTGGAAAAACACATATTAGCACTCCCCCTATCGCCTACAAGTACCCGCAAACCGTGGCATCATACCCTGCACCTTCATTTCCAAGTCCTTCTGCAGCACCGGCTCTTTATCCAACACGAGGCCAAGTTTCTTATCCTCCTGTTTCTGGGAAGCCAACTCCACCTGTGGGAATGAACAACTACCCATATTACTATCCCCAGCAGTAA 1104 0.462 MCGAQAPDPNATLTSHCIATLCIAEGANRSQTRNQKKQQMDDLKKRKLEEADEVSSKEDLRFLLDPLAKPHLIDLLTKLGSQYPSIAEEIKSIASPDPVHRKLFVRGLAWNTTLETLSVAFQEHGEIEEGAVIYDKATGKSRGYGFITYKHMESARNALRAPNKLIDGRMAVCNLACEGRSGASNALDLSLRKLYIGSLSPEVTSEMLLNFFGRHGEIEEGSVAYDKDTNESRGFGFITYKLAKAAMKAIDDSEKTLGGRNIIIKYADFHKCKTGLPALPAGVVPVTGLPMAPGYAQVQPGKTHISTPPIAYKYPQTVASYPAPSFPSPSAAPALYPTRGQVSYPPVSGKPTPPVGMNNYPYYYPQQ 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g2293 367 MobiDBLite consensus disorder prediction 35 50 - -
Bisa03g2293 367 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 49 169 - -
Bisa03g2293 367 MobiDBLite consensus disorder prediction 29 50 - -
Bisa03g2293 367 SUPERFAMILY RNA-binding domain, RBD 188 273 IPR035979 GO:0003676
Bisa03g2293 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 180 IPR000504 GO:0003723
Bisa03g2293 367 Coils Coil 33 53 - -
Bisa03g2293 367 Gene3D - 188 275 IPR012677 -
Bisa03g2293 367 Gene3D - 23 187 IPR012677 -
Bisa03g2293 367 SMART rrm1_1 193 265 IPR000504 GO:0003723
Bisa03g2293 367 SMART rrm1_1 102 174 IPR000504 GO:0003723
Bisa03g2293 367 SUPERFAMILY RNA-binding domain, RBD 89 179 IPR035979 GO:0003676
Bisa03g2293 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 269 IPR000504 GO:0003723
Bisa03g2293 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 262 IPR000504 GO:0003723
Bisa03g2293 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 169 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g2293 Bisa-ChrBisa03 33467843 33474632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g2293 188 343 C2H2 Transcription Factor Family AT2G19380 27.778 6.46e-11 62.0