Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g2285 ATGGATGCTCGCAAGAGAGGGAGGCCTGAGCCCGGCGGCAACATTAATGGCGGCTTCAAGAAGTTCAAGCAAGAAATGGAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCCGGCTGCCCGTTTGGTGAGGGCTGCCACTTCTTGCACCATGTTCCTGGGGGTTATAATGCTGTTGCCCAGATGATGAATCTAGCCCCTGTTGCACCTCAAGCATCAAGAAATATTGCAGCCCCCCCACCAATCCATAATGGGTCTACTCCTGCTGTTAAAACCCGAATATGCAACAAGTACAATTCTGCTGAAGGCTGCAAATTTGGTGATAAGTGTCATTTTGCACATGGTGAATGGGAACTTGGCAAGCCTATTGCTCCATCAGTAGATGATCATCGTGCCATGGCACCTATTCCTGGCCATATTGCCCCAACTCGAATGGAGCCGCCTGGTCCTATGGCTAGCTTTGGTGCCAATGCCACTGCCAAGATCAGTGTAGAAGCATCCCTGGCTGGAGCGATCATTGGGAAAGGTGGTGTGAACTCCAAACAGATCTGTCGCCAAACAGGGGCCAAACTATCAATCCGGGATCATGAGTCGGATCCAAATCTTAGAAATATTGAACTTGAGGGAAGCTTTGAACAAATTAAGGAAGCAAGTAACATGGTGAAAGAGTTGCTCGCAACCATCTCAATGTCTGCACCACCCAAAATCCCCGGTGCCCCTAGTGCTCCAGCCCCTCATGGAAGCAACTATAAGACCAAGCTGTGTGAGAATTTTGCCAAAGGATCTTGCACCTTTGGAGAAAGGTGTCACTTTGCACATGGGGCTACTGAATTACGTAAATCTGGAATATGA 879 0.4858 MDARKRGRPEPGGNINGGFKKFKQEMESLSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHHVPGGYNAVAQMMNLAPVAPQASRNIAAPPPIHNGSTPAVKTRICNKYNSAEGCKFGDKCHFAHGEWELGKPIAPSVDDHRAMAPIPGHIAPTRMEPPGPMASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGSFEQIKEASNMVKELLATISMSAPPKIPGAPSAPAPHGSNYKTKLCENFAKGSCTFGERCHFAHGATELRKSGI 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g2285 292 ProSiteProfiles Type-1 KH domain profile. 166 230 - -
Bisa03g2285 292 FunFam Zinc finger CCCH domain-containing protein 253 289 - -
Bisa03g2285 292 PANTHER CCCH ZINC FINGER/TIS11-RELATED 25 155 IPR045877 GO:0003729
Bisa03g2285 292 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 155 236 IPR036612 GO:0003723
Bisa03g2285 292 SMART kh_6 165 235 IPR004087 GO:0003676
Bisa03g2285 292 MobiDBLite consensus disorder prediction 1 20 - -
Bisa03g2285 292 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872
Bisa03g2285 292 CDD KH-I_AtC3H36_like 169 234 - -
Bisa03g2285 292 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Bisa03g2285 292 ProSiteProfiles Zinc finger C3H1-type profile. 258 285 IPR000571 GO:0046872
Bisa03g2285 292 Pfam KH domain 169 232 IPR004088 GO:0003723
Bisa03g2285 292 Gene3D - 92 130 - -
Bisa03g2285 292 Gene3D - 258 290 - -
Bisa03g2285 292 SUPERFAMILY CCCH zinc finger 257 288 IPR036855 GO:0046872
Bisa03g2285 292 Gene3D K Homology domain, type 1 162 257 IPR036612 GO:0003723
Bisa03g2285 292 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Bisa03g2285 292 SUPERFAMILY CCCH zinc finger 35 61 IPR036855 GO:0046872
Bisa03g2285 292 SUPERFAMILY CCCH zinc finger 97 129 IPR036855 GO:0046872
Bisa03g2285 292 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Bisa03g2285 292 SMART c3hfinal6 98 125 IPR000571 GO:0046872
Bisa03g2285 292 SMART c3hfinal6 258 284 IPR000571 GO:0046872
Bisa03g2285 292 FunFam Zinc finger CCCH domain-containing protein 93 130 - -
Bisa03g2285 292 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 259 283 IPR000571 GO:0046872
Bisa03g2285 292 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 125 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g2285 Bisa-ChrBisa03 33313865 33319324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g2285 35 133 C3H Transcription Factor Family AT1G68200 26.263 3.46e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa03g2285 KH_1 2.4e-12 CL0007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g2285 03 33313865 33319324 Bisa07g3148 07 66130292 66133955 CCT