Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g2265 ATGGAGCTCGCGTTGAGCCTAGGAGACACCCCAAAACCCTTCTCTTTTCTGGACAAGCTCGCGAAAATGCCTAACAAAGACACAGGGTTCTGCATACAACTCAATGCTGGCTTCACTGCTAAAAAATCTCAAGACAGAAGATGGCATAATGGAGGAGAAGGTGATGAAGAGAGAAGAAGTTCGTCAGATCCACCAGTTCAGCTCGATCTCCTTCCTCTGAAACCAATTCCTCCACCACATCCACCTTCCCAACTACCAATTCCATGGCTCTCCCATGCATTGGGTGGTGAAGAGGCGAGGGGTTTAGATGTGAACCGTTTGCCCGAAGATGAAGGCAATGACGCTACTGCACTCTCATCTCCCAACAGTGGGGTCTCTTCATTTCAGATGGATTTCTGTATTTCAAACTGTAATGGCAGTGGAAGCGGAAGAAACAAGAGAGAGCGTGAGGGCGAAGTCGAAAGAGCCAGCGATGATGATGAAAACGGTTTAACTCGGAAAAAACTCAGACTCTCTAAGGAACAATCTGCTTTCCTTGAAGAAAGCTTCAAAGAACACACCACTCTCAATCCTAAGCAGAAACTTGCTCTGGCAAAACAGTTAAATCTTCGTCCTCGTCAAGTGGAAGTTTGGTTCCAGAACAGAAGGGCCAGGACGAAGTTGAAGCAAACGGAAGTGGACTGTGAGTATTTGAAGAGATGCTGTGAGACTCTGACGGAAGAGAATAGGAGGTTACAGAAGGAGCTGCAAGAACTAAGGGCTTTAAAGACATCGCAGTCGTTTTACATGCAGCTTCCGGCGACCACACTCACCATGTGTCCTTCTTGTGAGAGGGTGGCTTCCAACTCCTCCGCCGCCGCCGCCAACAGTGGTTCTCAGATGCAAGCATCCTTGTCTCTCAACAAGCCCATAATGCCTCCGTTCGCCAACGGTCAGGCCCACGCAAACGAGGCCCAAGCCCATCAGACGCCTTCATGA 978 0.4908 MELALSLGDTPKPFSFLDKLAKMPNKDTGFCIQLNAGFTAKKSQDRRWHNGGEGDEERRSSSDPPVQLDLLPLKPIPPPHPPSQLPIPWLSHALGGEEARGLDVNRLPEDEGNDATALSSPNSGVSSFQMDFCISNCNGSGSGRNKREREGEVERASDDDENGLTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQSFYMQLPATTLTMCPSCERVASNSSAAAANSGSQMQASLSLNKPIMPPFANGQAHANEAQAHQTPS 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g2265 325 ProSitePatterns 'Homeobox' domain signature. 197 220 IPR017970 GO:0000981|GO:0006355
Bisa03g2265 325 FunFam Homeobox-leucine zipper protein 18 152 227 - -
Bisa03g2265 325 MobiDBLite consensus disorder prediction 139 166 - -
Bisa03g2265 325 CDD homeodomain 166 223 IPR001356 GO:0003677
Bisa03g2265 325 Pfam Homeodomain 166 220 IPR001356 GO:0003677
Bisa03g2265 325 SUPERFAMILY Homeodomain-like 160 223 IPR009057 -
Bisa03g2265 325 MobiDBLite consensus disorder prediction 70 86 - -
Bisa03g2265 325 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 47 295 - -
Bisa03g2265 325 SMART HOX_1 164 226 IPR001356 GO:0003677
Bisa03g2265 325 MobiDBLite consensus disorder prediction 42 63 - -
Bisa03g2265 325 MobiDBLite consensus disorder prediction 104 124 - -
Bisa03g2265 325 MobiDBLite consensus disorder prediction 289 325 - -
Bisa03g2265 325 ProSiteProfiles 'Homeobox' domain profile. 162 222 IPR001356 GO:0003677
Bisa03g2265 325 SMART halz 222 265 IPR003106 GO:0006355|GO:0043565
Bisa03g2265 325 Gene3D - 170 220 - -
Bisa03g2265 325 Coils Coil 228 258 - -
Bisa03g2265 325 MobiDBLite consensus disorder prediction 143 166 - -
Bisa03g2265 325 MobiDBLite consensus disorder prediction 42 89 - -
Bisa03g2265 325 Pfam Homeobox associated leucine zipper 222 256 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g2265 Bisa-ChrBisa03 32974884 32976138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g2265 100 278 Homeobox Transcription Factor Family AT3G60390 60.766 9.96e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bisa03g2265 Homeodomain 2.5e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g2265 03 32974884 32976138 Bisa07g3165 07 66339691 66341029 CCT
Bisa03g2265 03 32974884 32976138 Bisa03g2265 03 32974884 32976138 ECH