Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g2262 ATGAGCATCGATGATTCGGCGGTCAGCACCAATACCAACAAAAAGACTCTTAACTTCGATCTCTATAGCGTGGGTACTTTGCGCAACTTCCGGAGCTCCTGGATCAGTGATACAATGAGTCATGGGGGGATTGAGGGTGAAATTATTTCTAGTTATTATTTTTGCTTTGCCAGTGTTATCAGTGCTCTCATTCCTATTAAAGCTGAAGCAGTTCAAACAGTAATTTTAGCAATTTCATAATGTAGTATGCTTGTAGAAAACTCAAAGCAGAAAAGACTGGACTTAAGTAGAGTTTTGGGTCCCAGTCATTGTGAGAGAAATACTATCAGATCTGGATCATCAATGGCTCCTGGAGGCGGTGCTTGTGAAGAGGTTGTTGAGTCTCACCTGACAGTTTCAGATTATGACATAGCCAAATCCAAATATGACACTAATAGTAATAGTCCTCTTAGAAAGTCCGGCACTGGTGTTGGTGGAAAACATGGCAGTCATTCAAAGAATGGTGTGCAAGAATTACTTGAGTGCCCTGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAGTGCCCAAATGGCCACACGCTATGTTCAAGCTGTAAGATCAGAGTGCATAACCGTTGTCCAAGTTGTCACTATGATCTTGGAAATATAAGATGTTTAGCTCTGGAGAAGGTGGCTGAATCATTGGAACTTCCATGCAGATATCAAAATCTAGGTTGTCATGACATATTCCCATACTATACGAAGCTTAAGCATGAGCAAAACTGTCGATTTCGTCCATACAATTGCCCCTATGCTGGATCCGAGTGCTCTGTAACAGGTGACATTCCAACTCTTGTTGCCCATCTTAAGGATGATCACAAGGTTGACATGCATAACGGATGTACCTTCAACCATCGATACGTCAAATCAAATCCACATGAAGTGGAAAATGCAACATGGATGCTAACAGTTTTCAATTGTTTTGGAAGGCATTTCTGCTTGCACTTTGAGGCTTTTCAGATTGGTATGGCTCCGGTTTATATGGCTTTCTTACGATTCATGGGTGATGACAACGAGGCAAAGAAATTTAGCTACAGCTTGGAAGTTGGCGCAAACGGTCGCAGGCTTATATGGCAAGGAATTCCCAGGAGCATTCGTGACAGTCATAGGAAAGTTCGTGACAGTCAAGATGGACTCATTATTCAGAGGAACCTAGCTCTTTATTTTTCTGGTGGGGATAGACAGGAGTTAAAATTGAGAATTACTGGGCGTATATGGAAAGAAGAGTAA 1272 0.4182 MSIDDSAVSTNTNKKTLNFDLYSVGTLRNFRSSWISDTMSHGGIEGEIISSYYFCFASVISALIPIKAEAVQTVILAISXCSMLVENSKQKRLDLSRVLGPSHCERNTIRSGSSMAPGGGACEEVVESHLTVSDYDIAKSKYDTNSNSPLRKSGTGVGGKHGSHSKNGVQELLECPVCKNLMYPPIHQCPNGHTLCSSCKIRVHNRCPSCHYDLGNIRCLALEKVAESLELPCRYQNLGCHDIFPYYTKLKHEQNCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHKVDMHNGCTFNHRYVKSNPHEVENATWMLTVFNCFGRHFCLHFEAFQIGMAPVYMAFLRFMGDDNEAKKFSYSLEVGANGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGDRQELKLRITGRIWKEE 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g2262 423 MobiDBLite consensus disorder prediction 146 165 - -
Bisa03g2262 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 227 IPR013083 -
Bisa03g2262 423 CDD RING-HC_SIAHs 173 211 - -
Bisa03g2262 423 SUPERFAMILY TRAF domain-like 228 420 - -
Bisa03g2262 423 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 284 416 IPR008974 GO:0005515
Bisa03g2262 423 FunFam E3 ubiquitin-protein ligase SINAT3 227 283 - -
Bisa03g2262 423 FunFam E3 ubiquitin-protein ligase SINAT5-like 284 416 - -
Bisa03g2262 423 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 153 422 - -
Bisa03g2262 423 FunFam E3 ubiquitin-protein ligase SINAT5-like 127 226 - -
Bisa03g2262 423 SUPERFAMILY RING/U-box 169 215 - -
Bisa03g2262 423 ProSiteProfiles Zinc finger SIAH-type profile. 228 288 IPR013010 GO:0008270
Bisa03g2262 423 CDD Sina 289 417 - -
Bisa03g2262 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 228 283 IPR013083 -
Bisa03g2262 423 ProSiteProfiles Zinc finger RING-type profile. 175 211 IPR001841 -
Bisa03g2262 423 Pfam Seven in absentia protein family 217 416 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g2262 Bisa-ChrBisa03 32914247 32918013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g2262 115 423 C3H Transcription Factor Family AT2G41980 81.553 0.0 538