Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g2221 ATGGTAGGAGATACGACGCAATTTCCTCTAAAACTTATCAGAAAGCTTCTTTCCAACCTTTTCGCATCTGCATTTTTCATTCTCTCTCGGTTTCTGCGATTTCCTTCGAAGGTCTGGAAAATGCATGCGATAAATGAATTTCACCTTTTGAATGCTGTAATGACAGTGAAGGAGGAAGAAAATGCATTGTATGCTCTTTTATTTTTCTTAGTTGATGATGATGTCTTCAACTCTGAACTGCAACATCAGGAGTTACCAAGCGTAGTAGTTCCTACAAGTGATGTGGACCTTGGGCCTGAGAAGATTGAAGAAGAGAAAGAGAAAGAGACTCCCGCGTACAATTGTGATCTTTGTGATACAGATTTAGTTCTCAAGGTGGCTGAAGTATTGCTTCCAGGGCTAGCCACTGCCTGTGTCGATAACACAGCAGGTGGTCTGTTCAATACTCCCGGTTCAGTGGCTGCTGATTTGAGAAAGGAAATGATAGACTACCTTATGCAGAGAAGCGAATCTTTCGTTGCTGAGTTGGTTGTGTTAGAAGGTGGTCCAGATGGGGACGTTCTGAACAACCCTTTGGAGATCATTTCCATTTTTGTGGATGACTTTGCAATTGAAAAGAGGAATCTGTTCAGTCGCTTCTCTGGTTGGCTACTAAGTGAAAGGAGAGAAGATAGAATAGATGACATCGTTCAGGAGATGGAAATAAATGGGTTTTGGACTTTGGATAAAAGACAAACAGTTGCAGGAGCCTTAATCAAGAATGTTGACTACAAGAATGGATACCACTGCAACATGAAGTTTAACTCCTTGGAAGAACTCTCCAACCATGTTCATAACTGCAGCTTTAGGTGTATCATTTGCCATAACCAAGGCTGTGATGCCAGATTCTGCGCAGGTCATTTGGAGAAGCATGAATTAGTTTGTCCTTTCAAGATTATTCCTTGTGAGCAGAAGTGTCCAGACCACATTATGAGGCGTGAGATGGACAGACACTGCATAACTGTATGTCCCATGAAGCTTGTGAACTGCCCTTTCTATGCACTGGGGTGTCGAACCCCTATTGCACAGTGTTTGATTGACAAACATCGTTCAGAAGAACTTCATTTTCACCTCTTATGCGTTCTTCATAACATGTACAAGGAAGCATCTGAAGCAGATCTTAAGCCACGAATGGAGCAAATTCTACAGGCATCAACAGACAACAAATTAGCAGAGGCTCGGGATGCGCAAGTAGCAGCCGCTCCAGCCACCTTGCCCTCTATCTCTCGCTCTTCTTCTTTGCTCAGATCAGTGGAAACTAAGTCCCTTGTACTTAGCAGGATGGAGTCTCAAGTGAAGCACGCTGTGGTTGTTAAAGTCATGGGTCGTACTGGATCCAGAGGTCAGGTTACTCAGGTGAGAGTTAAGTTTTTGGATGACCACAACCGGTATATCATGAGGAATGTGAAAGGACCAGTGAGAGAAGGTGACATTCTGACCCTGCTTGAGTCTGAAAGAGAAGCAAGGAGACTGCGCTGA 1518 0.4361 MVGDTTQFPLKLIRKLLSNLFASAFFILSRFLRFPSKVWKMHAINEFHLLNAVMTVKEEENALYALLFFLVDDDVFNSELQHQELPSVVVPTSDVDLGPEKIEEEKEKETPAYNCDLCDTDLVLKVAEVLLPGLATACVDNTAGGLFNTPGSVAADLRKEMIDYLMQRSESFVAELVVLEGGPDGDVLNNPLEIISIFVDDFAIEKRNLFSRFSGWLLSERREDRIDDIVQEMEINGFWTLDKRQTVAGALIKNVDYKNGYHCNMKFNSLEELSNHVHNCSFRCIICHNQGCDARFCAGHLEKHELVCPFKIIPCEQKCPDHIMRREMDRHCITVCPMKLVNCPFYALGCRTPIAQCLIDKHRSEELHFHLLCVLHNMYKEASEADLKPRMEQILQASTDNKLAEARDAQVAAAPATLPSISRSSSLLRSVETKSLVLSRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDHNRYIMRNVKGPVREGDILTLLESEREARRLR 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g2221 505 FunFam 40S ribosomal protein S28 439 505 - -
Bisa03g2221 505 ProSitePatterns Ribosomal protein S28e signature. 496 504 IPR028626 -
Bisa03g2221 505 Pfam Ribosomal protein S28e 444 504 IPR000289 GO:0003735|GO:0005840|GO:0006412
Bisa03g2221 505 Pfam TRAF-type zinc finger 304 362 IPR001293 GO:0008270
Bisa03g2221 505 Gene3D - 438 505 IPR012340 -
Bisa03g2221 505 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 113 423 - -
Bisa03g2221 505 CDD S1_S28E 446 505 IPR000289 GO:0003735|GO:0005840|GO:0006412
Bisa03g2221 505 ProSiteProfiles Zinc finger TRAF-type profile. 304 351 IPR001293 GO:0008270
Bisa03g2221 505 SUPERFAMILY Nucleic acid-binding proteins 441 505 IPR012340 -
Bisa03g2221 505 Hamap 30S ribosomal protein S28e [rps28e]. 441 505 IPR000289 GO:0003735|GO:0005840|GO:0006412
Bisa03g2221 505 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 367 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g2221 Bisa-ChrBisa03 32183207 32196595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g2221 441 505 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 90.769 3.42e-33 118