Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g2170 ATGGCTGCCGCAGCTAGTGCTTCATCTTCCATCTGCAATCGAATCTATAACCTCTACTTCACTCCTTCTTCCTTCTCTATCACCGCCAAAATTCCTCAAAGACCTATTTTCCAAAAACCTCTCAACCTCAATCTCAAATCTCAACTCCTCAATTCCTCTCCTCTCTCGCTCTTCCATCTTCCTCTGGCTTCTGCTGCCTTCGATGGATTCGAAGTCGCTCAAGACAGCTCAGATGCACAGCTAGAAGATTCAGAACCAGAGGCTGAACCCTTGGAGAAGCCACAAGAAGAAACGGAAGAGGAGGAAGAGCAGAAGTTATCAGACTCAAACGGAGCAGGGAGACTGTATGTCGGAAATTTGCCGTATTCAATGACTTCCTTCGAGTTAACTGAAATTTTCAGCGAGGCTGGCAATGTGGTCTCTGTCGAGATCGTATATGATCGCGTTACGGACAGAAGCAGAGGATTTGCATTTGTTACGATGGGGAGCGCCGAAGATGCTCAAGAAGCCATTCGAATGTTTGATGGCTCTCAAATAGGAGGAAGGACAGTGAAGGTGAACATCCCAGAAGTGCCGAGAGGGGGTGAGAGGCTAGTAATGGGGCCTAAAGTAAGGAACAACTACAGAGGCTTCAAAGACAGCCCTCACAAGATATATGCTGGAAACCTTGGTTGGGGCTTGACCTCACAGGGTCTCAGGGATGCTTTTGCCAACCAGCCAGGCTTTCTGAGTGCCAAGGTCATATATGAGAGGGACACCGGAAGATCTCGAGGTTTTGGGTTTGTCTCTTTTCAGTCTGCTGAGGATGTTGAGCCTGCTTTGAATGCTATGAATGGTGTGGAGGTTCAAGGCAGGGCTTTGCGACTGAATTTGGCTGCAGATAGGACTTCTTCGTCGACTCCATCAATGGAGGAAAGTGCTGAAAATAATGTTGATAGCTCGGAATTGGTATCTAGCGTCAGCACATGA 969 0.4778 MAAAASASSSICNRIYNLYFTPSSFSITAKIPQRPIFQKPLNLNLKSQLLNSSPLSLFHLPLASAAFDGFEVAQDSSDAQLEDSEPEAEPLEKPQEETEEEEEQKLSDSNGAGRLYVGNLPYSMTSFELTEIFSEAGNVVSVEIVYDRVTDRSRGFAFVTMGSAEDAQEAIRMFDGSQIGGRTVKVNIPEVPRGGERLVMGPKVRNNYRGFKDSPHKIYAGNLGWGLTSQGLRDAFANQPGFLSAKVIYERDTGRSRGFGFVSFQSAEDVEPALNAMNGVEVQGRALRLNLAADRTSSSTPSMEESAENNVDSSELVSSVST 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g2170 322 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 294 IPR000504 GO:0003723
Bisa03g2170 322 MobiDBLite consensus disorder prediction 75 112 - -
Bisa03g2170 322 SMART rrm1_1 114 187 IPR000504 GO:0003723
Bisa03g2170 322 SMART rrm1_1 217 290 IPR000504 GO:0003723
Bisa03g2170 322 CDD RRM1_PSRP2_like 114 193 - -
Bisa03g2170 322 CDD RRM2_NsCP33_like 217 292 - -
Bisa03g2170 322 MobiDBLite consensus disorder prediction 78 104 - -
Bisa03g2170 322 FunFam 33 kDa ribonucleoprotein, chloroplastic 198 302 - -
Bisa03g2170 322 Gene3D - 70 196 IPR012677 -
Bisa03g2170 322 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 191 IPR000504 GO:0003723
Bisa03g2170 322 Gene3D - 201 308 IPR012677 -
Bisa03g2170 322 PANTHER OS02G0815200 PROTEIN 38 295 - -
Bisa03g2170 322 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 185 IPR000504 GO:0003723
Bisa03g2170 322 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 288 IPR000504 GO:0003723
Bisa03g2170 322 MobiDBLite consensus disorder prediction 294 322 - -
Bisa03g2170 322 SUPERFAMILY RNA-binding domain, RBD 114 295 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g2170 Bisa-ChrBisa03 31224345 31226533 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g2170 100 292 Eukaryotic Initiation Factors Gene Family AT3G16380 29.949 4.55e-18 82.8