Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g2162 ATGGACGAACTTGAAATTGAAATCCCTCAGTATTTCATATGTCCCATATCGCTCCAGATTATGAAAGACCCCGTCACGGCCGTAACCGGAATAACCTACGACCGGGACAGCATCGAGCACTGGCTCTTCCAGAGCAACAACACCACTTGCCCTGTCACCAAACAGCCCCTGCCTCCCCACTCCGACTTGACCCCCAACCACACCCTCCGCCGTCTCATCCAGGCCTGGTGCACCCAGAACGCCGCCCACGGCGTCGATCGCATCCCCACTCCCAAATCCCCCCTCACGAAATTCCACATCCTCAAAATCCTCACCCGTCTCCGCCACCCCCACTTGCATCTCAAGACTCTCAGACAGTTGGAGCTGTTAGCAGCGGAGAATGAGAGGAACAGAAGGTGTTTGATGGAAGCCGGTGTGCCTAAGGCCATGGTCAAGATCGTTTCGTCCTGTTTCAACAGAGCCCGCATCGACGACGGTCTCGAAGAGGCTGTGAGTTTGTTACAGTTTGTTAAGATCCCCCCTGAGGAAATCAACACGCTTCTGAATGAGAATAACCAAATTCTGGATTCTCTCACGTGGATTCTCGGCTGCGAAATAACACAGAATAGTACAGCTGTGAAATCCCACGCCGTTACGGTACTCAAAACCATCATCCAGAATGCCCATCCTAGGGTTCTGGAGACACTCAAACCCGAATTCTTTGAGAGAATCGTGAACATCTTAAGAAACGGGATAACCCAACAGGGGATGAACTCTGCTTTGAAAGTGTTATTAGCGGCTTGTTCAGTGGGGAGGAATCGGAAGATGATGGTGGAAGCTAATGCGGTGTTCGAATTGATCGAGATTGAATTGGGGACGTTGGAGAAGAAAACCACAGAGTTGATTTTCGGGGTACTGTTTCATCTGTGTAGTTCTGCGTTTGGGAGAGCGGAGCTTGTGCGTCACAGAGGAGGCATTGCGGTGTTGACGGAGAGAATACTGAGAATATCGCCGGCGGTGAATGACAGTGCGGTGTCCATACTGTCAGTGATATGCAAGTCGTCGTGTGCGTCGCGTGTGGTGGTGCAGGAGATGCTCACGATGGGGACTGTGGACAAGCTGTGCATGTTGCTGCAGACAGATCATCCCACGTATCTCAAAGAGAAGGCCATGGGAATACTCAAGATTTATTCTCAGGATTGGAAGGATTCGCCTTGCTTTCCCGGGAGATCTTTCGATGCAAGCTTGAAGGGATGA 1236 0.5121 MDELEIEIPQYFICPISLQIMKDPVTAVTGITYDRDSIEHWLFQSNNTTCPVTKQPLPPHSDLTPNHTLRRLIQAWCTQNAAHGVDRIPTPKSPLTKFHILKILTRLRHPHLHLKTLRQLELLAAENERNRRCLMEAGVPKAMVKIVSSCFNRARIDDGLEEAVSLLQFVKIPPEEINTLLNENNQILDSLTWILGCEITQNSTAVKSHAVTVLKTIIQNAHPRVLETLKPEFFERIVNILRNGITQQGMNSALKVLLAACSVGRNRKMMVEANAVFELIEIELGTLEKKTTELIFGVLFHLCSSAFGRAELVRHRGGIAVLTERILRISPAVNDSAVSILSVICKSSCASRVVVQEMLTMGTVDKLCMLLQTDHPTYLKEKAMGILKIYSQDWKDSPCFPGRSFDASLKG 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g2162 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Bisa03g2162 411 CDD RING-Ubox_PUB 9 63 IPR045210 -
Bisa03g2162 411 Coils Coil 117 137 - -
Bisa03g2162 411 PANTHER WDSAM1 PROTEIN 5 401 IPR045185 GO:0061630
Bisa03g2162 411 SUPERFAMILY ARM repeat 104 393 IPR016024 -
Bisa03g2162 411 SMART Ubox_2 11 76 IPR003613 GO:0004842|GO:0016567
Bisa03g2162 411 FunFam RING-type E3 ubiquitin transferase 1 86 - -
Bisa03g2162 411 ProSiteProfiles U-box domain profile. 7 83 IPR003613 GO:0004842|GO:0016567
Bisa03g2162 411 SUPERFAMILY RING/U-box 2 86 - -
Bisa03g2162 411 Gene3D - 96 397 IPR011989 -
Bisa03g2162 411 Pfam U-box domain 8 80 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g2162 Bisa-ChrBisa03 31040081 31041316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g2162 2 400 U-box Gene Family AT3G11840 42.117 6.75e-108 323