Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g2114 ATGTCCATCAACCCAGAGACGAGAACCTGGTGGAGTGAAGATCAGCAGCAGCAGCAGCAAGGAATCCTAATGGAAACAATCCAAAACTCCTGGATGAATACGGGCCGTTTCAATCTGAATCAAGACGAGGAAGAAGGGGACGACGAGGAACAGGGGAGCAGCAGCTGCCACGTGAACAGCAATGGGATTGGGAGGTGGTCGTCGCGCTCAGGAGAAGACGAGAAGGAGGCGATGTTCGAGAAGCCTCTGACGCCGAGCGACGTGGGGAAGCTGAATCGTCTGGTGATCCCCAAGCAGCACGCCGAGAAGTACTTCCCGCTGGCCGCCGCCGACAATTCCTCCGGCGGCGTCGGCGACAACAAGGGGCTCTTGCTGAGTTTCGAGGACGAGTCTGGCAAGTGCTGGCGCTTCCGTTACTCTTATTGGAACAGCAGCCAGAGCTACGTGTTGACCAAAGGCTGGAGCCGTTACGTCAAAGACAAACGCCTCGACGCCGGCGACGTCGTTTCCTTCCTACGCCACCGTACCCACACCCACCGCCTTTATATCACCTGGAGGCGTCGCCACCTCCATCCCCCCTCCGCCCAATCTAGCAGAGCCATGGCGGTGCCAAGTGACAATAGCAATAATGGTAATAATAGTCATAGTAACACTAACAGCAAGGGCGTATCTTCGGGGTGGACCACCACAGGTTTCTATCCTGCGCATCCTTATCCTACGCATCATCACACTTCGCCATTCCCATCTCACAGTCTTCATGCAGGAAGAGGGACCCCATCTCAGAGGAAGCAAAGCTCCAAGGTACTGAGGCTATTCGGAGTGAACATGGAATGTCAACCCGACCCGGATGAATCAGAACCTTCCAGACCCGAATACGTGTCGTCCTCATCGTCGTCAAACCCCCACCAACAGTACTTGTACCAGTACCATCATCATCGTCTTCAGGCTTCTTGTGCTTCCGATCCTCACCACCACATGGATGTGAAGCAGATGAGAAATCGCCCAGGATGA 1011 0.549 MSINPETRTWWSEDQQQQQQGILMETIQNSWMNTGRFNLNQDEEEGDDEEQGSSSCHVNSNGIGRWSSRSGEDEKEAMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLAAADNSSGGVGDNKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVSFLRHRTHTHRLYITWRRRHLHPPSAQSSRAMAVPSDNSNNGNNSHSNTNSKGVSSGWTTTGFYPAHPYPTHHHTSPFPSHSLHAGRGTPSQRKQSSKVLRLFGVNMECQPDPDESEPSRPEYVSSSSSSNPHQQYLYQYHHHRLQASCASDPHHHMDVKQMRNRPG 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g2114 336 MobiDBLite consensus disorder prediction 238 264 - -
Bisa03g2114 336 SMART B3_2 79 189 IPR003340 GO:0003677
Bisa03g2114 336 MobiDBLite consensus disorder prediction 53 67 - -
Bisa03g2114 336 MobiDBLite consensus disorder prediction 198 224 - -
Bisa03g2114 336 SUPERFAMILY DNA-binding pseudobarrel domain 75 188 IPR015300 -
Bisa03g2114 336 MobiDBLite consensus disorder prediction 277 303 - -
Bisa03g2114 336 MobiDBLite consensus disorder prediction 38 84 - -
Bisa03g2114 336 MobiDBLite consensus disorder prediction 289 303 - -
Bisa03g2114 336 MobiDBLite consensus disorder prediction 193 224 - -
Bisa03g2114 336 Pfam B3 DNA binding domain 79 188 IPR003340 GO:0003677
Bisa03g2114 336 Gene3D - 73 193 IPR015300 -
Bisa03g2114 336 ProSiteProfiles B3 DNA-binding domain profile. 79 189 IPR003340 GO:0003677
Bisa03g2114 336 CDD B3_DNA 78 179 IPR003340 GO:0003677
Bisa03g2114 336 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 33 292 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g2114 Bisa-ChrBisa03 30249096 30251666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g2114 72 288 RAV Transcription Factor Family AT5G06250 51.724 9.89e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bisa03g2114 B3 1.2e-27 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g2114 03 30249096 30251666 Bisa07g2397 07 54169779 54172783 CCT
Bisa03g2114 03 30249096 30251666 Bisa03g2114 03 30249096 30251666 ECH