Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bisa03g2077 | ATGGCGGTGAAGAGGTTCCTCAAACCCATCGCAAAACCATCACCCTCGTCGTCCTCACCACCCCTTGCTCCGATCCCCAATCCTCCTCTTCCAGCCCCACCAGATTTGTCTCTCACACCACTTCCCTCTATCACTGTGTCTCCCAACTCCCACTATCACCGCCTCCTCCAATTCTTAAAGGCCCATCTCGCCCCTCCGGTCACACCCGACGCCCTTCTCCATTTCCTCAAATCCAAGCTTCACCACCATCCCAGCTTCACCTTCTATGACTTCCACATCTTCAACTGGGCCTCCACTATTGATTCCTACCGCCACAACCACTCCACTTTTGAATGGATGGCTCGTACTCTCGCTATTACCAACCGCTTGGTCGAACTCCGGGCGCTTCTCCAATTTTTGGCTTCCAATCCTTGCCCCTGCTCCGACGGTATTTTCTCTTGCTCTCGAACTGAACCCATATTCCAGTTTGCCATTAACGCCTTCTGTAAAGCTCGGAAGTTGGATGATGCTGTGTTTGCTTTTGAATGTATGCGGAGACTGATTGATGGGCGGCCTAATGTGGTCATTTACAATTGTTTGATTCATGGGTTTGTGAAATGCGGAAGGCATGATAAAGCCTTGGAATTTTATGATAAAATGATTAGAGATAGGGTCAAGCCTGATGTGTTTACTTTTAATATTTTGATAAGTAGTTATTGTCGAAATTCACAGTTTGTATTGGCTTTGGAGTTGTTTAAGGAGATGAGGGAAAAGGGGTGCAATCCAAATGTGGTTACTTTTAATACTTTGATTAAGGGGCTCTTTAGGGAGCGGAGGATTGAACAAGGGGTTGAGATGGCCTACGAGATGATTGAATTGGGATGTCATCTCTCAAGTGTGACTTGTGAGATCTTAGTTGATGGACTTTGTAAGGAAGGTAAGGCTTTGGAAGCGTGTGAGATATTATCAGACTTGTCCAACAAGAAAGTTTTGCCCAATGGATATGATTATTTTGTTCTGGTGGAAACTCTATGTGGAAAAGGGGATGCTGTTAGAGCGATGCAGCTCATTTATGAGCTATGGGATCATGGAAATGTCCCGAGTTTGATTGCTTGTATTACATTGATTGACGGTTTAAGAAGTACGGAGAAGATTGAAGAAGCATTGAGATTATTGGAAAAGATGCTTAATGAGGGTATAGTTCCAGATATCGTGACATTTAATAGTGTTCTTCAAGATATTTGCAATGTGCAAAGAACAGCTGAAGCAAACAAATTGAGATTGCTAGCTTCAAGAAAGGGTTTGAAACCTGATGGCATGACTTACAGAATTTTGGTTTCAGGGTATACGCAAGAGGGGAGTGAACAGGAGGGAGAATTGGTGGTAAATGAAATGTTGGATAGGGGATTTATACCTGATCTTGCTACATATAATAAATTGATGAGTGGTTTCTCTAAATTGCCAACGATCTACACGCCATAA | 1461 | 0.436 | MAVKRFLKPIAKPSPSSSSPPLAPIPNPPLPAPPDLSLTPLPSITVSPNSHYHRLLQFLKAHLAPPVTPDALLHFLKSKLHHHPSFTFYDFHIFNWASTIDSYRHNHSTFEWMARTLAITNRLVELRALLQFLASNPCPCSDGIFSCSRTEPIFQFAINAFCKARKLDDAVFAFECMRRLIDGRPNVVIYNCLIHGFVKCGRHDKALEFYDKMIRDRVKPDVFTFNILISSYCRNSQFVLALELFKEMREKGCNPNVVTFNTLIKGLFRERRIEQGVEMAYEMIELGCHLSSVTCEILVDGLCKEGKALEACEILSDLSNKKVLPNGYDYFVLVETLCGKGDAVRAMQLIYELWDHGNVPSLIACITLIDGLRSTEKIEEALRLLEKMLNEGIVPDIVTFNSVLQDICNVQRTAEANKLRLLASRKGLKPDGMTYRILVSGYTQEGSEQEGELVVNEMLDRGFIPDLATYNKLMSGFSKLPTIYTP | 486 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bisa03g2077 | 486 | SUPERFAMILY | HCP-like | 161 | 358 | - | - | |
| Bisa03g2077 | 486 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 396 | 430 | IPR002885 | - | |
| Bisa03g2077 | 486 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 256 | 290 | IPR002885 | - | |
| Bisa03g2077 | 486 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL | 62 | 478 | - | - | |
| Bisa03g2077 | 486 | Pfam | PPR repeat | 184 | 213 | IPR002885 | - | |
| Bisa03g2077 | 486 | Gene3D | Tetratricopeptide repeat domain | 68 | 215 | IPR011990 | GO:0005515 | |
| Bisa03g2077 | 486 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 291 | 325 | IPR002885 | - | |
| Bisa03g2077 | 486 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| Bisa03g2077 | 486 | Pfam | PPR repeat family | 220 | 268 | IPR002885 | - | |
| Bisa03g2077 | 486 | Pfam | PPR repeat family | 360 | 409 | IPR002885 | - | |
| Bisa03g2077 | 486 | Gene3D | Tetratricopeptide repeat domain | 216 | 309 | IPR011990 | GO:0005515 | |
| Bisa03g2077 | 486 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 431 | 465 | IPR002885 | - | |
| Bisa03g2077 | 486 | NCBIfam | pentatricopeptide repeat | 223 | 257 | IPR002885 | - | |
| Bisa03g2077 | 486 | NCBIfam | pentatricopeptide repeat | 293 | 326 | IPR002885 | - | |
| Bisa03g2077 | 486 | NCBIfam | pentatricopeptide repeat | 365 | 397 | IPR002885 | - | |
| Bisa03g2077 | 486 | NCBIfam | pentatricopeptide repeat | 434 | 466 | IPR002885 | - | |
| Bisa03g2077 | 486 | NCBIfam | pentatricopeptide repeat | 188 | 222 | IPR002885 | - | |
| Bisa03g2077 | 486 | NCBIfam | pentatricopeptide repeat | 258 | 291 | IPR002885 | - | |
| Bisa03g2077 | 486 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 361 | 395 | IPR002885 | - | |
| Bisa03g2077 | 486 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 186 | 220 | IPR002885 | - | |
| Bisa03g2077 | 486 | Pfam | Pentatricopeptide repeat domain | 424 | 477 | IPR002885 | - | |
| Bisa03g2077 | 486 | Pfam | PPR repeat | 158 | 179 | IPR002885 | - | |
| Bisa03g2077 | 486 | Pfam | PPR repeat | 293 | 320 | IPR002885 | - | |
| Bisa03g2077 | 486 | Gene3D | Tetratricopeptide repeat domain | 310 | 422 | IPR011990 | GO:0005515 | |
| Bisa03g2077 | 486 | Gene3D | Tetratricopeptide repeat domain | 423 | 482 | IPR011990 | GO:0005515 | |
| Bisa03g2077 | 486 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 221 | 255 | IPR002885 | - | |
| Bisa03g2077 | 486 | MobiDBLite | consensus disorder prediction | 14 | 29 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bisa03g2077 | 188 | 484 | Miscellaneous Gene Families | AT4G11690 | 27.946 | 1.10e-34 | 134 |