Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g2036 ATGGACTTCCCTCTGAAGCAATGGAGAAACCAGCCTGAGTCAGAAGAACAGCATTCTGCAAAGATGCCAAAACTCCTCCTTGAGCCCCATCTACACCCACCACATTCGTCTCCCTCTGCCCTCCCTTTCTTTGTACCTGAACATAACAGCAAAATCAGCTCGCCCTCGGCATTTTCTGATTCCACGGTACCCGCTGCCAGAATTCCCCGGATGGGAGGGAGTTATTTCAGCCTGGCTCAGTGGCAGGAGCTGGAGTTGCAGGCCCTGATATTCAGATACATGTTGGCTGGTGCTGCTGTTCCTCATGAGCTTCTTCTTCCTATTAAGAAGAGTCTTCTTCTTTCACATCCTTCTCCTTATTTCCTCCATTATGAGCCTCCTTGGTATTGGGGAGGAGCCGCCATGGATCCGGAGCCCGGCCGCTGTCGGAGGACGGACGGCAAGAAATGGCGGTGCTCGAGGGACGTGGTGGCCGGCCAGAAGTACTGCGAGCGCCACATGCATCGTGGTCGAAACCGTTCAAGAAAGCCTGTGGAACTACCCACACCAACCACTGCCGCCGTTGGCGGCGGAGGGCCTCTCGGTGCTGCAACAACCTCCGTCTCTCCGCTGCACCTGGCAACAGCAACTATCAAATCCCCTTTCGACCTCCTCCACCTTAGTCAATGTTCATCTGGGACCAACAAGAACGAAAACAAGAGCCTATTTGAAAACAGAGATAACGTGGACGGTGAAGGTAGATCAGATGGGCATATATTGCGGCATTTCTTCGACGATTGGCCACGATCGCTTCAAGAGCCTGACAATGCTGAAAGGAACGGTAGCTCCGTCAACTCAGCCACATGCCTCTCTATTTCAATGCCCGGAAATGTTTCGTCGGACGTTTCGTTGAAACTGTCCACAGGCGACGGTGGAGAGGATCCATGTCCCAGAAGTGGAAATGTGGACCCACAGCATTTGCAGTTGAATTGGGCAGGAGGATGGACCTCTTCGGCTAGTCAAGTGGCTTCAATGGGAGGACCACTTGCAGAGGCTCTCAGATCGTCTACGTCATCTTCCTCACCCACCAGCGTTCTACATCAATTGCCTCGTAGTTCTGCCTCTGAAACCAGCTTCATTAGCACCTAG 1128 0.5301 MDFPLKQWRNQPESEEQHSAKMPKLLLEPHLHPPHSSPSALPFFVPEHNSKISSPSAFSDSTVPAARIPRMGGSYFSLAQWQELELQALIFRYMLAGAAVPHELLLPIKKSLLLSHPSPYFLHYEPPWYWGGAAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTPTTAAVGGGGPLGAATTSVSPLHLATATIKSPFDLLHLSQCSSGTNKNENKSLFENRDNVDGEGRSDGHILRHFFDDWPRSLQEPDNAERNGSSVNSATCLSISMPGNVSSDVSLKLSTGDGGEDPCPRSGNVDPQHLQLNWAGGWTSSASQVASMGGPLAEALRSSTSSSSPTSVLHQLPRSSASETSFIST 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g2036 375 SMART QLQ_2 74 110 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bisa03g2036 375 MobiDBLite consensus disorder prediction 226 247 - -
Bisa03g2036 375 MobiDBLite consensus disorder prediction 294 320 - -
Bisa03g2036 375 MobiDBLite consensus disorder prediction 1 20 - -
Bisa03g2036 375 ProSiteProfiles QLQ domain profile. 75 110 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bisa03g2036 375 Pfam QLQ 76 108 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bisa03g2036 375 MobiDBLite consensus disorder prediction 233 247 - -
Bisa03g2036 375 Pfam WRC 137 179 IPR014977 -
Bisa03g2036 375 MobiDBLite consensus disorder prediction 344 375 - -
Bisa03g2036 375 MobiDBLite consensus disorder prediction 343 375 - -
Bisa03g2036 375 PANTHER GROWTH-REGULATING FACTOR 5 50 292 IPR031137 GO:0005634|GO:0006351|GO:0032502
Bisa03g2036 375 ProSiteProfiles WRC domain profile. 136 180 IPR014977 -
Bisa03g2036 375 MobiDBLite consensus disorder prediction 170 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g2036 Bisa-ChrBisa03 28916258 28918286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g2036 1 362 GRF Transcription Factor Family AT3G52910 49.744 4.49e-91 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Bisa03g2036 WRC 2.3e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g2036 03 28916258 28918286 Bisa07g2330 07 52990067 52992199 CCT
Bisa03g2036 03 28916258 28918286 Bisa03g2036 03 28916258 28918286 ECH