Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g2022 ATGGATAGCTCACGTAGATCGTTCGATAGATCGAGAGAGGCAGGTATCAAGAAGCCCCGATTGACCGACGAGCTCGAGCGCGGCTCAAATTCCAATGCCCGACCGTTTCCTCAGCGACCACTGGCTTCTGGGGTTAATATGTTGGCCTCAGCAAGGTTTAGGACAAACAACAGAAATTTGGAAAGCAGTGACTCGGCTCGCGGTGGATACCAACCCCAGCCGCTACACCAAGAGCTTGTAACTCAGTATAAAACCGCGCTTGCTGAGCTCACTTTCAATTCTAAACCGATAATTACCAACTTGACTATCATTGCAGGCGAGAACCTTTATGCCGCGAAGGCAATTGCAGCCACAGTTTGTGCTAACATTTTAGAGGTTCCTACTGAACAAAAGCTGCCATCTCTTTATCTTTTAGACAGTATTGTTAAAAACATTGGGCGGGACTATATAAAATACTTTGCTGCTAGACTACCTGAGGTATTCTGCAAGGCATACAGACAGGTTGATCCTTCTGTCCATTCAAGTTTGAGGCATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCTTCAGACCCTCCAGATGATTGAGAAAGAACTTGGTTTCACCCCTGCTGTCAATGGTTCATCTTCTGCATCTTCTACACTCAGGAGTGATTCTCAGTCACAACGACCACAGCATAGTATCCATGTGAATCCTAAATATTTAGAGAGGCAGCATCTTCAGCAGTCTGGCAGGACTAAAGGAATAGCTAATGATGTGGCCGGAGCTATTGCAAACTCAACTGATGGTACAGAAGGGGCAGATAGAGCATTGGGTGCTGGACGACCCTGGGTGGATTCCAGTGTTAACATGCAAAACATTCAACGCTCTAACAGAGATGCATATAATGATTCTGTTCCTGAAAAGGGCATTGGTGCATCCTATGGTGGCAATGAATATGGTTCTGATCTTTCAAGGAATTCAGAATTGGGGATTGGAAGAACTGGTGGGAGGGTCCCTGAGTTAGTACATGACAAAGATTGGTACAGAACAGGCAATAGTGCTGCAGAGATGGTGTCTGGCCAAAGAAACGGTTTCAGTCTCAAGCGTGGTTTATCAAATCATGAAGCACCAAAGTCCACAAATTTGGATGAACATAGTCAGCCATCACAAAGTCTAACTAGCATAAAGAGTGGAGTGTTGTCAAGTAGCTGGAAAAATTCTGAGGAAGAGGAATACATGTGGGATGAGATGAACCCTGGATTGACTGATCGTGGTGCATCCAATGTCTCTAACGACTTGGGCAAAGACCAGTGGACTGCTGATGATGACAATTTGGCAGTTGAAGATCGCCTTCAAATCCCACACAATTTTGGGGCAAAGTTTGATAGAGAAGTAACCACTCAAAAGAAACTGCTACCTGCTTTTGGTCATCGGCCATCATTATCTTGGCAGTTGCAGGAGCAGCAATCATTTGATGTTCTGAATCGTAAGCCATGTCCTTCGGAAAGCTTTGCATCTGCTCGTGGTGGTCTACCAACAAATGCAAATTCTTCTGCTGTCAAAATGGGAAATCGATCTTTCCTTTCAAATGCAACAATAGGATCAACAGGAATGGTGCGACAACAGCAACTCCATTTTGTTGGAGCAGAGTCCCCTTCGGGGCAGTCACCTTCGCGACAACAGTCTCCATCACCACCAGTTAATGTGCGCCATCCTCCTCATCAATTGCGTAATTTTCCTGATCAAGACCGTTCACAGACTTTTAAAACATCTCAATTTTCAGAAGGTCTACAGAGCCAAGATATTCAAGATTCTTCACCTGTCCCTCCACATATTGTTCAGTTCAGTAATTCAAGAAGATCACAGCAAAAGGACTTGCAAGGTCCATCGACTTCAGTGTCTGCCTTTCAGCCAAGACATCACAAGGCAGCTTCACAGCAGCGTCAGCTTGGCTCATCTCAGACTGAGGTCTCTGATATTACTGAAAAGCCACCCCAATCTAAATTTTCTGTAGCTGGAGAAACTTCAGAGCAGGCAACTACAACAAGTAGTTTGTTAGCTGCAGTTATGAAGAGTGGGATTTTCACGAACAATTCAATTTCCAGTAGTCAACCTACCACAAGTTTCCTAGATAAAAGGAATCTGCCATTGAAGCCTAGCCGGCCAAGTGGAACTTCGACTACCACATCAATTTCTTCAGGGCCTGGCGTTGGATCACCATCTCCATTAGGTCCTTCTTCCAATGATGACTCATCCGCTCTGCCAAAAGTATCTGAAGGAAAGGTTGGAGCACCACCAATGGTGCCTGCTCTACCACTAGCTTCCTCTACTGTGAGCAGTGCCTCAGCCAAGACCTCAAATGCTACCAATAATAACCCTAGTCCAGTTTCAAACCTTTTAAGCTCCTTAGTTGCGAGGGGTTTGATTTCTGCAAAAACAGAGACATCAACTAACGTGCCATCTGAGATGCTGATCCGATTGGAAGACCAAAGCGAAAGCATTACCACCAGTAGCTCTTTGCCAGTTGCTTCGATTTCTGGTTCTGTGGCTGTCCCTGTATCATCTACCAGAGATGATCAACCTGCAAAAAGCTCTGGTCAATTAACAACCACAGAGATAAGAAATCTCATTGGTTTTGAGTTTAAGTCCAATGTAATCCGAGAACTGCATTTACCTGTGATCAGAGAACTATTGGACGATTTTCCATACCATTGTGGCATTTGTGGCCTCAGGCTTAAACATCAGGAACAGTTTAATAGACATTCAGAGTGGCATGCTACTAGAGAAAGAGAACAAAATGATCAAGTTAAGGCCTCGAGAAGATGGTATTTAAGGTCAAGTGATTGGATTGTTGGCAAGGATGAAGTTTCATCTCAGTATGAGTATATTGATTCTGTAGAATCACATGGAAGGAAATCAGAAAACAGTGAACTGGATGCTGTGGTTCCGGTAGATGAAGACCAGTGCTTGTGCGTGTTGTGTGGTGAAGTATTTGAAGATGTTTACTATCAAGAAAAGGACGAGTGGATGTTCAAAGGGGCTGTTTACATATCTCTTTCAGATAGTGATGGTGACCCGTGTATCAATGTCAGTACTGCTAGGGGCCCCATTGTTCATGCGAGATGCTTTTCAGAGAGCTCCATATCCAGTGCTGCTACAAAGGAACAGGATTAA 3156 0.4439 MDSSRRSFDRSREAGIKKPRLTDELERGSNSNARPFPQRPLASGVNMLASARFRTNNRNLESSDSARGGYQPQPLHQELVTQYKTALAELTFNSKPIITNLTIIAGENLYAAKAIAATVCANILEVPTEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVHSSLRHLFGTWKGVFPLQTLQMIEKELGFTPAVNGSSSASSTLRSDSQSQRPQHSIHVNPKYLERQHLQQSGRTKGIANDVAGAIANSTDGTEGADRALGAGRPWVDSSVNMQNIQRSNRDAYNDSVPEKGIGASYGGNEYGSDLSRNSELGIGRTGGRVPELVHDKDWYRTGNSAAEMVSGQRNGFSLKRGLSNHEAPKSTNLDEHSQPSQSLTSIKSGVLSSSWKNSEEEEYMWDEMNPGLTDRGASNVSNDLGKDQWTADDDNLAVEDRLQIPHNFGAKFDREVTTQKKLLPAFGHRPSLSWQLQEQQSFDVLNRKPCPSESFASARGGLPTNANSSAVKMGNRSFLSNATIGSTGMVRQQQLHFVGAESPSGQSPSRQQSPSPPVNVRHPPHQLRNFPDQDRSQTFKTSQFSEGLQSQDIQDSSPVPPHIVQFSNSRRSQQKDLQGPSTSVSAFQPRHHKAASQQRQLGSSQTEVSDITEKPPQSKFSVAGETSEQATTTSSLLAAVMKSGIFTNNSISSSQPTTSFLDKRNLPLKPSRPSGTSTTTSISSGPGVGSPSPLGPSSNDDSSALPKVSEGKVGAPPMVPALPLASSTVSSASAKTSNATNNNPSPVSNLLSSLVARGLISAKTETSTNVPSEMLIRLEDQSESITTSSSLPVASISGSVAVPVSSTRDDQPAKSSGQLTTTEIRNLIGFEFKSNVIRELHLPVIRELLDDFPYHCGICGLRLKHQEQFNRHSEWHATREREQNDQVKASRRWYLRSSDWIVGKDEVSSQYEYIDSVESHGRKSENSELDAVVPVDEDQCLCVLCGEVFEDVYYQEKDEWMFKGAVYISLSDSDGDPCINVSTARGPIVHARCFSESSISSAATKEQD 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g2022 1051 MobiDBLite consensus disorder prediction 573 671 - -
Bisa03g2022 1051 ProSitePatterns Zinc finger C2H2 type domain signature. 899 919 IPR013087 -
Bisa03g2022 1051 MobiDBLite consensus disorder prediction 691 748 - -
Bisa03g2022 1051 MobiDBLite consensus disorder prediction 1 27 - -
Bisa03g2022 1051 Gene3D - 72 200 IPR008942 -
Bisa03g2022 1051 Pfam CID domain 84 193 IPR006569 -
Bisa03g2022 1051 MobiDBLite consensus disorder prediction 1 41 - -
Bisa03g2022 1051 SUPERFAMILY ENTH/VHS domain 77 204 IPR008942 -
Bisa03g2022 1051 MobiDBLite consensus disorder prediction 543 559 - -
Bisa03g2022 1051 SMART 558neu5 78 200 IPR006569 -
Bisa03g2022 1051 MobiDBLite consensus disorder prediction 691 764 - -
Bisa03g2022 1051 ProSiteProfiles CID domain profile. 75 203 IPR006569 -
Bisa03g2022 1051 MobiDBLite consensus disorder prediction 359 396 - -
Bisa03g2022 1051 MobiDBLite consensus disorder prediction 210 230 - -
Bisa03g2022 1051 MobiDBLite consensus disorder prediction 210 228 - -
Bisa03g2022 1051 FunFam polyadenylation and cleavage factor homolog 4 72 200 - -
Bisa03g2022 1051 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 59 1045 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Bisa03g2022 1051 MobiDBLite consensus disorder prediction 543 671 - -
Bisa03g2022 1051 CDD CID_Pcf11 80 192 IPR047415 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g2022 Bisa-ChrBisa03 28665733 28673257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g2022 74 415 C2H2 Transcription Factor Family AT4G04885 38.177 1.06e-56 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa03g2022 CID 1.3e-13 CL0020
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g2022 03 28665733 28673257 Bisa03g2022 03 28665733 28673257 ECH