LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa03g2020	ATGGCCAAGTTTCTTGCTGCACTGATCTTGGCCCTCATTGCCATTTCCACGCTTCACACACTGATCATGGTCAGGGAGGCCACCACTATAAAAATAAGAGAAAATTTGGACCCGGCAGTCTCAAGAGCTACGAATGCCCATCACAATGCTCGAGGAGGTGTAAGAAAACACAGTACCACAAGCCCTGCATGTTTTTCTGTCAGAAATGCTGCAGGAAATGCCTGTGCGTCCCCCCCGGGTATTATGGCAACAAGGCAGTGTGCCCTTGCTACAACAACTGGAAGACCAAGGAAGGAGGACCCAAGTGCCCTTGATCTCATCGCCTTCATCATCAACATTTATACTCTTGCTTCTTGCCTTAATCCAATTCTGCCCTTTCCTGTTCTGTCGCTCCTTAGAAATTTGCCTATTACCAGAGTGACTAATGTTCTTGTTATCGTCTATCCAATTTCTGATACGCACATTGTTTTTACCCCCGCGATTAATATGAACCCCAAAGACAAAGGTGAACCAAAATCTCCGACGAGGTCTTCTGGTTTGGCGACGGAACCGGAGCAGGGAATGATGGAGTTTGAAGCATTGGGTTCTGAATCGTTCGGATATACAGCGGATAGTGTTTCCATGGCGGACATTGGCCTTTCTGACCCTTGGATGGAGTTTGAAGCATTTTCAACCCTGAACCCGACGTCTCTCGCTTCTTCTTCTTCTTCTGCTTCCCCTGTTATGGCAATGCCCGTTGACGAGAGACCTCCTTCGTTGCCACGACCTACCGGGGAGGAGTTGGAGGAGGTTGATGTGCCGCAGCCGCTTGAGAGTTTAGAGGGGAATCCAGTTCCACCATTTCTTTGGAAAACTTACGATCTGGTGGATGATCCGTCGCTGGATTCGATCATATCATGGGGCTCGAGCGGTGCTAGTTTCGTGGTATGGGACCCTGTGGAGTTTGCAAGGATCATCTTGCCAAGGAATTTCAAGCATAACAATTTCTCCAGTTTTGTCCGCCAGCTAAATACTTATGGGTTCCGCAAGATTGACTCTGATAAGTGGGAGTTTGCCAATGAAGGTTTCAAGCAGGGAGAAAGACATCTGTTGAAGAACATACAAAGGCGCAGGTCGCTTCAATCCCAGCATGTTGGTAGCTATATTGGACCATCCACTGCAGGAAAATCTGGACTCGAGGTTGAGATAGAAAGACTGAGGAAGGAAAGAAGTATGTTAATGCAAGACGTGGTTGATTTGCAGCAACAGCAGCAAAGGACTATTCACCATGCTGGACAAGTGAACCAGAGGCTCCAGTCTACAGAGCAAAGACAGAAACAAATGGTTTCTTTCTTAGCAATGTTATTTCAAAACCCAGCCTTTTTAGCCCGCCTTAAGCAAAGGAAGGAACAAGCAGATATAGATTCTCCAAGAGTGAGGAGAAAGTTTGTCAAGCAGCACCGCCATGAAACAGGAACATCAGACTCTTTGAAGGAAGGGCAGCTTGTAAAATACCAACCTGATCGGAGAAATATAACCAACCCTTCTGAAACATCAGTACTAAATCCAGTTTCTGTTGAGCAGTCTTCTGGCTACCTTTCACAGGGTTTAGCAACAGAACCGATTTCAGGAGCAGAGAATCTGAATTTGCCAGTTGAGAATATTGTATCAGATGAATTGGCTGCAGTGCATGAGTTTATGGCAACTCCAGAGATCATAGGAGAAGGATCTTCAGGCTTAGGACTTGAAGATCCCCTTTACAAAGGGAAAAAGGTCCTGAGCCCAGTTCAAGAAGTTATGCTGGAGTATTTTGTATCTTTCCCGGAGGATTTGACCATGGAGAAAAGTTTTTCAACGTTTTACCCTCCTGAAACTGAAAGCATTATTAAACAAGAAGATATATGGAACCCAGGCTTTAACGTTAGCGGTGCTGCTTCTAGCTCTGGGAATGAACTGTGGGGCAATCCTGTCAGTTATGATGGGCCAGAATTTGGAGTGACAAGTGGCATGCCAGACATCTGGGGCAAAAGCTGTATGCAAGAAACAATAAATATTGAGAAGTGGCCAACTGATGAATTCCCTCTCAATGAAACAGAAAGCCAGCCTGATCGCCCAAAAGATGATCAATAA	2109	0.458	MAKFLAALILALIAISTLHTLIMVREATTIKIRENLDPAVSRATNAHHNARGGVRKHSTTSPACFSVRNAAGNACASPPGIMATRQCALATTTGRPRKEDPSALDLIAFIINIYTLASCLNPILPFPVLSLLRNLPITRVTNVLVIVYPISDTHIVFTPAINMNPKDKGEPKSPTRSSGLATEPEQGMMEFEALGSESFGYTADSVSMADIGLSDPWMEFEAFSTLNPTSLASSSSSASPVMAMPVDERPPSLPRPTGEELEEVDVPQPLESLEGNPVPPFLWKTYDLVDDPSLDSIISWGSSGASFVVWDPVEFARIILPRNFKHNNFSSFVRQLNTYGFRKIDSDKWEFANEGFKQGERHLLKNIQRRRSLQSQHVGSYIGPSTAGKSGLEVEIERLRKERSMLMQDVVDLQQQQQRTIHHAGQVNQRLQSTEQRQKQMVSFLAMLFQNPAFLARLKQRKEQADIDSPRVRRKFVKQHRHETGTSDSLKEGQLVKYQPDRRNITNPSETSVLNPVSVEQSSGYLSQGLATEPISGAENLNLPVENIVSDELAAVHEFMATPEIIGEGSSGLGLEDPLYKGKKVLSPVQEVMLEYFVSFPEDLTMEKSFSTFYPPETESIIKQEDIWNPGFNVSGAASSSGNELWGNPVSYDGPEFGVTSGMPDIWGKSCMQETINIEKWPTDEFPLNETESQPDRPKDDQ	702

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa03g2020	702	SUPERFAMILY	"Winged helix" DNA-binding domain	276	370	IPR036390	-
	Bisa03g2020	702	SMART	hsfneu3	277	370	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bisa03g2020	702	MobiDBLite	consensus disorder prediction	477	512	-	-
	Bisa03g2020	702	FunFam	Heat stress transcription factor B-4	274	371	-	-
	Bisa03g2020	702	PRINTS	Heat shock factor (HSF) domain signature	281	304	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bisa03g2020	702	PRINTS	Heat shock factor (HSF) domain signature	319	331	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bisa03g2020	702	PRINTS	Heat shock factor (HSF) domain signature	332	344	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bisa03g2020	702	Pfam	HSF-type DNA-binding	281	370	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bisa03g2020	702	Coils	Coil	389	416	-	-
	Bisa03g2020	702	Gene3D	-	274	371	IPR036388	-
	Bisa03g2020	702	MobiDBLite	consensus disorder prediction	680	702	-	-
	Bisa03g2020	702	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	267	503	IPR027725	-
	Bisa03g2020	702	ProSitePatterns	HSF-type DNA-binding domain signature.	320	344	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bisa03g2020	702	MobiDBLite	consensus disorder prediction	234	259	-	-
	Bisa03g2020	702	MobiDBLite	consensus disorder prediction	163	184	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa03g2020	Bisa-ChrBisa03	28655733	28660923	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa03g2020	242	690	HSF	AT5G03720	41.880	1.29e-95	300

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Bisa03g2020		HSF_DNA-bind	1.1e-30	CL0123