Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g2018 ATGGACATTACCTCCGCAGCAATCACCAACATCACCGCCTCCAATAATACCAGTACAAAATCCCCAGAACCTGACAGTGAAAATCCGACCCGGATCCAACCCACCACCACCAAGCCCTTGTCCTTCTCCACCGGCTTCCTCAAGCGCCACCACCCCCACCACCACCCCCATCATCACAGCCACCCCATGGCGGTTACCTACAAAGAATGCTTGAAAAACCATGCAGCCAGCTTGGGAGGCCTCGCGCTCGACGGTTGCGGCGAGTTCATGCCCTCCCCGAGCGCCAATTCTGCCGACCCCAGCTCCATCAAATGCGCCGCCTGCGGCTGCCACCGCAATTTCCACCGCCGTGAACCCGAGGAGCCTATTTCCACCACCCACGTCGTAGAGTATCAGCCCCACCATCGGCACCAACCTCCGCCGCCGCAACCCTTTCAAGCTTCGAATCGGAGCCCCAATTCAGCTTCCCCTCCTCCGATCTCCTCTTCCTACTTCCCCTCCGCACCCCACATGCTCCTAGCTCTCTCGGCTGGCCTATCGGTTCCTCCGGAGAGCACGGCGGCTCCCACGAACGCTTTGGGGACTCCCAGCCCGAATACGAGGAAGCGGTTCAGGACCAAGTTCACTCAAGATCAGAAGGACAAGATGTACCAGTTCGCGGAGAGAGTGGGGTGGAAGATGCAGAAGAGGGATGAGGATTTGGTGCAAGAGTTCTGCCATGAGATTGGGGTGGACAGAGGAGTTTTGAAGGTTTGGATGCACAATAACAAGAACACTTTTGCGAAAAGAGATTCAAATGGTAATAGGAGCGCTCTTGAGCTTGAACCCAACAACACCCATAACAATGAAATCAATGTCAACGGCAGTAACAACAACAACGGCACCACCCAGGATCCCAATCATCACTACCAGAACGATATTGGGGCAAACGCCGGTACTAATGGGTCTTCCTCATCTTCTTGA 963 0.5535 MDITSAAITNITASNNTSTKSPEPDSENPTRIQPTTTKPLSFSTGFLKRHHPHHHPHHHSHPMAVTYKECLKNHAASLGGLALDGCGEFMPSPSANSADPSSIKCAACGCHRNFHRREPEEPISTTHVVEYQPHHRHQPPPPQPFQASNRSPNSASPPPISSSYFPSAPHMLLALSAGLSVPPESTAAPTNALGTPSPNTRKRFRTKFTQDQKDKMYQFAERVGWKMQKRDEDLVQEFCHEIGVDRGVLKVWMHNNKNTFAKRDSNGNRSALELEPNNTHNNEINVNGSNNNNGTTQDPNHHYQNDIGANAGTNGSSSSS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g2018 320 Gene3D - 190 262 - -
Bisa03g2018 320 MobiDBLite consensus disorder prediction 262 320 - -
Bisa03g2018 320 MobiDBLite consensus disorder prediction 182 203 - -
Bisa03g2018 320 Pfam ZF-HD protein dimerisation region 65 119 IPR006456 -
Bisa03g2018 320 MobiDBLite consensus disorder prediction 1 61 - -
Bisa03g2018 320 MobiDBLite consensus disorder prediction 183 203 - -
Bisa03g2018 320 FunFam Zinc-finger homeodomain protein 2 190 262 - -
Bisa03g2018 320 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 66 118 IPR006456 -
Bisa03g2018 320 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 38 259 - -
Bisa03g2018 320 SUPERFAMILY Homeodomain-like 194 262 IPR009057 -
Bisa03g2018 320 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 67 118 IPR006456 -
Bisa03g2018 320 MobiDBLite consensus disorder prediction 131 163 - -
Bisa03g2018 320 NCBIfam homeobox domain, ZF-HD class 201 258 IPR006455 -
Bisa03g2018 320 MobiDBLite consensus disorder prediction 47 61 - -
Bisa03g2018 320 MobiDBLite consensus disorder prediction 1 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g2018 Bisa-ChrBisa03 28612631 28613593 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g2018 1 257 ZF-HD Transcription Factor Family AT5G15210 52.672 1.23e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Bisa03g2018 ZF-HD_dimer 6.3e-28 No_clan