Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g2000 ATGGCCTACCCCCCTCATCATACCTTCCTCTTTCAGACCCACGAAGACCATGACCCCCTCCCCGCAACCTCCCTCCACGCCTTCTCCTCCTTGCCCCCTCCCAGACACTTCCAAGGGGGTGGCGCTGTGCCGTTGATGTTGAAGAGATCGGTGTCATTTTCAGGGATCGATAATAACGCAGAGGAAGCAGGGGTAGGAGTTCTGCATGGAGACGAAGAGCTATCTGATGATGGATCGCAGATGGGGGAGAAGAAGAAGAGACTGAACATGGAGCAGGTGAGGGCTCTGGAGAAGAGCTTTGAGCTGGGGAACAAGCTGGAGCCAGAGCGCAAAATGCAGCTGGCCAAGTCCCTGGGCCTGCAGCCCAGGCAGATCGCCATCTGGTTCCAGAATCGGAGGGCCCGATGGAAGACCAAGCAGCTCGAGAAGGAGTACGAAGCCCTCAAGAGACAGTTAGAGGCCCTCAAGGCAGATAACCATGTCCTTAAGGCTCACAACCATAAACTCCACGCTGAGTTAGAAGCTCTAAAGGGAAGAGATTGCTGCGAGGGCGGAACAGCGATCCATAAGAAAGAAACTGAAGTTTGTTGGAGCAATGGAAGTGAGAATAGCTCAGAGATTAACTTGGATCTCCCAAGAACACAAGTTATAAACAGTCCTGTATCTTCTGCCCAAAATGGTAAAAGCCTTCTTCCCACTAAGCCCACCAGCATAACCCAATTCCTCCACAGCTCATCAAGATCAGAACTTCAAGATGAAAGCTTGTGCAACATGTTTCACGGCATCGATGAGCACCAGAATTTCTGGCCCTGGCCAGAGCACCACCATCAGTTTCATTGA 840 0.519 MAYPPHHTFLFQTHEDHDPLPATSLHAFSSLPPPRHFQGGGAVPLMLKRSVSFSGIDNNAEEAGVGVLHGDEELSDDGSQMGEKKKRLNMEQVRALEKSFELGNKLEPERKMQLAKSLGLQPRQIAIWFQNRRARWKTKQLEKEYEALKRQLEALKADNHVLKAHNHKLHAELEALKGRDCCEGGTAIHKKETEVCWSNGSENSSEINLDLPRTQVINSPVSSAQNGKSLLPTKPTSITQFLHSSSRSELQDESLCNMFHGIDEHQNFWPWPEHHHQFH 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g2000 279 FunFam Homeobox-leucine zipper protein ATHB-13 76 143 - -
Bisa03g2000 279 SUPERFAMILY Homeodomain-like 75 141 IPR009057 -
Bisa03g2000 279 CDD homeodomain 84 140 IPR001356 GO:0003677
Bisa03g2000 279 ProSitePatterns 'Homeobox' domain signature. 114 137 IPR017970 GO:0000981|GO:0006355
Bisa03g2000 279 Gene3D - 76 148 - -
Bisa03g2000 279 ProSiteProfiles 'Homeobox' domain profile. 79 139 IPR001356 GO:0003677
Bisa03g2000 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 72 271 IPR045224 GO:0003700
Bisa03g2000 279 SMART HOX_1 82 143 IPR001356 GO:0003677
Bisa03g2000 279 Coils Coil 131 165 - -
Bisa03g2000 279 Pfam Homeodomain 84 137 IPR001356 GO:0003677
Bisa03g2000 279 PRINTS Lambda-repressor HTH signature 119 135 IPR000047 GO:0003677
Bisa03g2000 279 PRINTS Lambda-repressor HTH signature 110 119 IPR000047 GO:0003677
Bisa03g2000 279 Pfam Homeobox associated leucine zipper 139 178 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g2000 Bisa-ChrBisa03 28356449 28358113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g2000 1 273 Homeobox Transcription Factor Family AT3G01220 49.645 1.25e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bisa03g2000 Homeodomain 3.2e-16 CL0123