Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1982 ATGATGGAGGCAAACCATGCCTTTTTGATAAAGATGACCGAGGGGATCAAGGAGCAGGCTTTCATATATGCTTCACTGGTCAAGGGTCGCACCGAACTTTTGGAGGAAAAGGAGTCAGAAGGTCTAGGACGTTGTCCTTTCGAGACCCCAGCCATCCTTTGCCCTTTAAGCCAAGGCTCCGGGATGGCATCATGTGTTACCCTACTCTTCCTGGCTACCCTAGCCATTACTGTCCCTTCCCTACGAGCCAACATTGCTGAATTTGACGAATATTACCAGAAACGATCTGAAGAAGCACGTAGTGCAGTCCTCACGGCTTACGAGCCTGACCCTTTTAATGTCACGTCCGACCTTAACTTCCACGTTAATTTGTTCCATATGAACGCCACAAGAAGGGGGCTAGCGGGAAAATGGAAATTTGGAGGACAGTGCGAGGCCACGAACCCGATTGACCGGTGCTGGCGGTGCAGGCCGGACTGGGCCCAGGACCGGATGAGGCTAGCTACTTGCGTGAAGGGCTTCGGCCGCAAGACCACCGGCGGTCTCGGCGGCCCAATCTATGTCGTCACCGATCCCTCCGACGACGATATGGTGAACCCGAAGCCCGGGACTCTGCGACACGCCGTGATCCAGGACGGTCCATTGTGGATTATATTCCAGCGCGACATGGTCATCAATTTGAATCAAGAATTGCTATTTAGTTCCCACAAGACCATTGACGGTCGCGGAGCCATTGTGCATATCACAGGGGGTGCTGGCTTTTCTCTGTTCTACGTCTCCAATGTGATCATCCATAGCATTCGCATCCACGACACCGTACCGAAGCCAGGTGGCTTAATTAGGGATTCCATCGGCCACTTGGGGTCGAGAACGAGGAGTGATGGGGACGCCATCTCCATCTTCGGCTGCTCCAACATTTGGATCGATCATATTTCCATGGCCAATGCCGCAGATGGGCTCGTTGACGTCATTGAAGGCTCTACTGGCATCACCATATCCAATTGCCACATGACTCACCACAACGATGTGATGTTGTTTGGAGCAAGCGACATGTATACAGGGGACAAGATGATGCAGATAACAGTGGCGTTCAATCATTTTGGGCAAGGATTGATACAGAGGATGCCAAGAGCGAGATATGGGTTCGTGCACGTTGTGAACAATGACTACACTCACTGGCTGATGTACGCGATTGGAGGAAGCTCAAACCCAACCATATTGAGCCAGGGGAATCGTTTCATTGCTCCGAACGAGAACGCAGCGAAGGAGATAACCCACAGATCCTACGCGACGCCGGCACAGTGGAGCACGTGGAAATGGAAGTCGGAGATGGACTTGATGATGAATGGGGCCACGTTTCAACAGTCGGGAGGGCCCTTGGGGCCATTGCCATTCGGGAATCAAGATCTGATCAAGCCCAGAGACGGGAGTTTCGTGACAAGGCTTACTAGATATAGTGGCGCCCTCACTTGCCACGTGGGCAAGCCGTGTTAG 1494 0.5254 MMEANHAFLIKMTEGIKEQAFIYASLVKGRTELLEEKESEGLGRCPFETPAILCPLSQGSGMASCVTLLFLATLAITVPSLRANIAEFDEYYQKRSEEARSAVLTAYEPDPFNVTSDLNFHVNLFHMNATRRGLAGKWKFGGQCEATNPIDRCWRCRPDWAQDRMRLATCVKGFGRKTTGGLGGPIYVVTDPSDDDMVNPKPGTLRHAVIQDGPLWIIFQRDMVINLNQELLFSSHKTIDGRGAIVHITGGAGFSLFYVSNVIIHSIRIHDTVPKPGGLIRDSIGHLGSRTRSDGDAISIFGCSNIWIDHISMANAADGLVDVIEGSTGITISNCHMTHHNDVMLFGASDMYTGDKMMQITVAFNHFGQGLIQRMPRARYGFVHVVNNDYTHWLMYAIGGSSNPTILSQGNRFIAPNENAAKEITHRSYATPAQWSTWKWKSEMDLMMNGATFQQSGGPLGPLPFGNQDLIKPRDGSFVTRLTRYSGALTCHVGKPC 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1982 497 PANTHER PECTATE LYASE 18-RELATED 99 495 IPR045032 GO:0030570
Bisa03g1982 497 PRINTS Pollen allergen Amb family signature 170 187 IPR018082 -
Bisa03g1982 497 PRINTS Pollen allergen Amb family signature 294 315 IPR018082 -
Bisa03g1982 497 PRINTS Pollen allergen Amb family signature 396 415 IPR018082 -
Bisa03g1982 497 PRINTS Pollen allergen Amb family signature 230 246 IPR018082 -
Bisa03g1982 497 PRINTS Pollen allergen Amb family signature 374 393 IPR018082 -
Bisa03g1982 497 PRINTS Pollen allergen Amb family signature 438 462 IPR018082 -
Bisa03g1982 497 PRINTS Pollen allergen Amb family signature 194 219 IPR018082 -
Bisa03g1982 497 PRINTS Pollen allergen Amb family signature 468 491 IPR018082 -
Bisa03g1982 497 Pfam Pectate lyase, N terminus 84 134 IPR007524 GO:0030570
Bisa03g1982 497 Pfam Pectate lyase 258 413 IPR002022 -
Bisa03g1982 497 SUPERFAMILY Pectin lyase-like 148 488 IPR011050 -
Bisa03g1982 497 Gene3D - 147 490 IPR012334 -
Bisa03g1982 497 SMART amb_all 222 419 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1982 Bisa-ChrBisa03 27990763 27994023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g1982 62 497 Polysaccharide Lyase AT5G15110 53.602 0.0 526