LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa03g1960	ATGGAACTCAACTATTTTTCATTTGAATGTAATGCATTTCTGATGACCTCTCTCTTCCAAACAGTTAAAGGACCCCTCATAAAGATTCCTGAAACGGTTTTTTCTGCATTGCTTGGTTGGACAATTATTGTCTTCCCTGTCTCATCGAGTGTCTTTCAATTTGCTGCTCTTTATCTTCTTTCTCCGATGAAAACTACTACTTTTGAGGTTTCATTTTTAGAATTCCTCCTGTTTTGGATGGAGTATGTTGAGTTGGAATTCTTGGGAATACTCGATTGGCACTGTGCTACTGAGAGACCTGTGACTGTGAGCCCAAAAGTAGCACAAGAAGATCTCTTACTTTTCACCTCTCCTTCCAAATTGCATCACCATTACATACTCGACCCAAGTCCTTCCTTCTCTTACAAAATGGGAAGACCACCTTGCTGTGATAAATCCAATGTGAAAAGAGGCCTCTGGACTGCCGAGGAAGACGCTAAAATACTCGCTTATGTATCCAATCATGGCATTGGGAATTGGACACTTGTTCCCAAAAAAGCAGGGTTAAACAGATGTGGCAAGAGCTGCAGGCTTAGATGGACCAATTATCTGAGACCTGACCTCAAGCATGACAGCTTCACTCCCCAAGAAGAAGACCTTATTATTAACCTTCACGAAGCTATAGGAAGCAGATGGTCCTTGATCGCGAGGCAACTGCCCGGAAGAACAGACAACGATGTGAAGAACCATTGGAACACAAAGCTGAGGAAGAAGCTTATGAAGATGGGGATTGACCCTGTCACCCATAAGCCTGTGTCCCAAGTCCTCTCTGACTTGGGAAGCCTCAGTGCCCACCCAAATCTTCAAACTGAACCTTCTGCTACAAACTCCAACTTAATGCTCTCTGATCACCAACCTCATGAACATCAACCTCATCACCCGCAATTCCAAGTCTCTATCCATAACGAAGCTGCATCTTCATGCTCTTCTTCATCATCATCATCTTCTTCTTCTTCTTCCTCGAATCTCACACGATTAAGCTCACCCCAGCAAGTAATTACTACCACTAATGCTCCTCCTTGTTCTTCTTACTTTGATTGGAGCGAGTTTCTACTGAGTGATCCCTCCATTTGCTCCGACTTTCAACAGATGAACCAGTGTGACATGCAGGGGTTTTTATCGTCACTGAGTCCCTCAGTCATAACACACAATCAAATTCAAATTTCTTATGATGCCAATGGCTATATTGAGCATGACAAGCATGGAGGAACCACTGCAAGTGAGGATTCAGGGGTCATTAGCTATAAGCAATACTGTGAAGGGACTTCATCTTCTTCAGGGGATTCATTCGTGGATGCTATTTTGGACAGAGATAGTGAGATGAGAGCAGAATTCCCCGAACTGTTGGATGGATCTTTTGATTACTAG	1407	0.4328	MELNYFSFECNAFLMTSLFQTVKGPLIKIPETVFSALLGWTIIVFPVSSSVFQFAALYLLSPMKTTTFEVSFLEFLLFWMEYVELEFLGILDWHCATERPVTVSPKVAQEDLLLFTSPSKLHHHYILDPSPSFSYKMGRPPCCDKSNVKRGLWTAEEDAKILAYVSNHGIGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLKHDSFTPQEEDLIINLHEAIGSRWSLIARQLPGRTDNDVKNHWNTKLRKKLMKMGIDPVTHKPVSQVLSDLGSLSAHPNLQTEPSATNSNLMLSDHQPHEHQPHHPQFQVSIHNEAASSCSSSSSSSSSSSSSNLTRLSSPQQVITTTNAPPCSSYFDWSEFLLSDPSICSDFQQMNQCDMQGFLSSLSPSVITHNQIQISYDANGYIEHDKHGGTTASEDSGVISYKQYCEGTSSSSGDSFVDAILDRDSEMRAEFPELLDGSFDY	468

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa03g1960	468	Pfam	Myb-like DNA-binding domain	150	197	IPR001005	-
	Bisa03g1960	468	Pfam	Myb-like DNA-binding domain	205	246	IPR001005	-
	Bisa03g1960	468	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	202	252	IPR017930	-
	Bisa03g1960	468	MobiDBLite	consensus disorder prediction	275	297	-	-
	Bisa03g1960	468	Gene3D	-	204	267	-	-
	Bisa03g1960	468	MobiDBLite	consensus disorder prediction	275	344	-	-
	Bisa03g1960	468	SMART	sant	202	250	IPR001005	-
	Bisa03g1960	468	SMART	sant	149	199	IPR001005	-
	Bisa03g1960	468	FunFam	Transcription factor RAX3	143	203	-	-
	Bisa03g1960	468	Gene3D	-	143	203	-	-
	Bisa03g1960	468	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	145	201	IPR017930	-
	Bisa03g1960	468	MobiDBLite	consensus disorder prediction	308	344	-	-
	Bisa03g1960	468	ProSiteProfiles	Myb-like domain profile.	145	197	IPR001005	-
	Bisa03g1960	468	ProSiteProfiles	Myb-like domain profile.	198	248	IPR001005	-
	Bisa03g1960	468	CDD	SANT	153	197	IPR001005	-
	Bisa03g1960	468	FunFam	transcription factor MYB80	205	265	-	-
	Bisa03g1960	468	CDD	SANT	205	248	IPR001005	-
	Bisa03g1960	468	PANTHER	F14D16.11-RELATED	137	468	-	-
	Bisa03g1960	468	SUPERFAMILY	Homeodomain-like	147	244	IPR009057	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa03g1960	Bisa-ChrBisa03	27426544	27428933	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa03g1960	137	468	MYB Transcription Factor Family	AT3G28470	49.858	6.46e-90	275

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Bisa03g1960		Myb_DNA-binding	3.9e-15	CL0123