Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1952 ATGGATGGTGATCTGGAAACGAGCATGGCTGTGGCAAGAAAGAAGAAGAAAATTGGACCTATTCGATCCATTTTTATGCACGCCGATAGTCAAGATTGGTTTTTCATGGTCCTCGGTATCATTGGGTCCGTTGGCGACGGCTTCTCCACCCCTCTTGTGCTCTTTGTTACTAGCAGCTTGATGAACAATGTTGGCCGTGCTCTTTCCATGGATGATAGCAGTACTTTCCTTCATAACATTAATAAGAATGCAGTGAATTTACTATATGTGGCTTGTGGGTCATTTCTTGTTTGCTTCCTCGAGGGTTATTGTTGGACCAGAACAGGTGAGAGACAAGCTGCGAGAATGAGAGCCAGATATCTGAAAGCAGTGCTCCGACAAGAAGTGGCTTACTTTGATCTGCACGTCACAAGCACGTCCGAGGTTATCACCAGCGTCTCTAACGACAGCCTCGTGATTCAAGATGCTCTTGCTGAAAAGGTTCCAAACTTCTTGATGAACGTGTCTATGTTCATTGGGAGCTACATAGTGGCTTTTGCAATGTTGTGGAGGCTGGCTATTGTTGGATTCCCCTTCGTGATTCTTCTTGTGATCCCTGGTCTAATCTACGGAAGAACTCTAATGGGGGTGGCCAGAAAGGCGAGGGAAGAGTATAATCAAGCTGGTTCAATAGCAGAGCAGGCCATATCTTCCATCAGAACCGTCTATTCCTTTGTAGGGGAAAGCAAGACCATAGCCGCTTTCTCCGAAGCTCTACAAGGATCTGTCAAGCTGGGACTGAAGCAAGGCCTTGCTAAAGGCTTAGCCATCGGAAGCAACGGCGTCGTCTTCGCCATATGGTCTTTCATGTCCTATTACGGTAGCACTCTGGTCATGTACCATGGTGCTGAAGGCGGTACCGTTTTCGTTGTCGGAGCCTCCATAGCCATTGGTGGATTAGGTTTGGGAGCCGCTTTACCCAACATGAAGTACTTCTCCGACGCAAGTTCAGCAGGGGAACGCATAATGGAAGTGATAAAAAGAGTCCCTGCTATCGATTCGGACAACATGGACGGGGAGATTCTAGAGAGCGTTTCAGGGGAAGTGGAATTCGATCACGTGGACTTCGCGTACCCGTCAAGGCCAGACAGCATTATCCTGAGCGATTTCTGCTTGAAGATTCCGGCGGGGAGGACGGTGGCGCTGGTGGGTGGGAGTGGGTCAGGGAAGTCGACGGTGATATCGCTTTTGCAGAGATTCTATGACCCACATGGGGGAGAGATAAGGCTGGACGGGGTGGCCATTCGGAAGATGCAGCTCAAGTGGCTCAGGTCAACGATGGGGCTGGTGAGCCAGGAGCCTGCTCTGTTCGCGACCAGCATCAAAGAGAACGTACTTTTCGGAAAGGAGGATGCTTCAATGGAAGAGGTTGTGGAGGCAGCCACAGCTTCCAATGCTCATAGTTTCATCTCACAGTTGCCTCAAGGATACGATACCCAGGTTGGTGAAAGGGGAGTTCAGATGTCAGGGGGACAAAAACAGAGGATCGCCATTGCTCGAGCAATAATAAAGAAACCAAGACTGCTTTTGCTAGACGAAGCAACCAGCGCCTTGGACTCTGAGTCCGAACGAGTTGTTCAAGAGGCTCTGGACAAAGCAGCCGTGGGTCGCACCACCATCATAATCGCTCACCGCTTATCCACCATCCGAAACGCCGACATCATTGCTGTCGTTCAGAGCGGAAAGATCATGGAGATGGGCTCACACGATGACCTCATCGAAAACGACAACGGGCTTTACACCTCTCTCGTTCGTCTCCAACAAACAGAACAATCCAAAAGCAAAGAAGAGGTTATTTTTACCCCATCGTCCATATCAAACAGAGACATAAATAACACCAGCAGTCGTAGGCTTTCTCTGGTGAGTCGTTCAAGCTCTGCCAACTCAATAGCACCTAACCCAGCCTCACTTGTTGATGAAGATGATGGTCATTATGCTATAGAAGATCAGAAATTCCCTGTTCCTTCATTTCGGAGATTGTTGGCTCTTAATCTCCCAGAATGGAAGCAGGCAACTTTGGGTTGTATCAGCGCAATGTTGTTCGGTGCGGTTCAGCCAGTGTATGCGTTTACGATGGGGTCTATGGTATCTGTGTATTTTTTGACAGACCATGATGAGATCAAAGAGAAGACGAGGATATATGCTCTCTGTTTTCTGGGGTTGGCTGTGTTCTCTTTGCTTATTAATATAAGCCAGCATTATAATTTCGCTTACATGGGAGAGTACCTTACCAAAAGGGTCAGAGAGAGAATGCTCTCGAAGATACTCACATTTGAAGTCGGATGGTTTGATCAGGACGAAAATTCTAGTGGTGCTATTTGCTCTAGACTTGCTAAAGATGCCAATGTGGTGAGATCTTTGGTGGGAGATAGAGCGGCCTTGTTGGTACAAACTTTCTCAGCAGTGATAGTAGCCTGCACAATGGGGTTGGTTATTGCATGGAGGCTCGCCATTGTTATGATAGCTGTCCAACCCCTTATCATCGGTTGCTTTTACACTAGACGTGTCCTACTTAGGAGCATGTCCAACAAGTCCATCAAAGCCCAAGATGAAAGCAGCAAGATAGCTGCCGAAGCTGTTACTAATCTTCGAACTATCACTGCCTTCTCTTCCCAGGACCGCATACTTACAATGCTCGAAAAGGCCCAAGAAGGTCCAAAACAAGAGAGCATTCGCCAATCTTGGTATGCTGGTATTGGGCTTGCGTGTTCCCAAAGCCTCATGTCTTGTACCTGGGCTTTAGACTTTTGGTATGGCGGAAAACTTATCTCCCATGGCTACATCTCTTCCAAATCATTGTTTGAGACCTTCATGATTTTGGTCAGCACAGGCCGTGTCATTGCTGATGCTGGAAGTATGACGTCGGACCTTGCCAAGGGCGCTGATTCAGTGGGCTCTGTTTTTGCAGTTCTAGACAAATACACGAAAATTGAGCCTGAGGACCCAGATGGGTATAAGCCCGATAAGATAATAGGCCGAATAGAACTCCGCGATGTTCATTTTGCCTACCCAGCTAGACCTGATGTGACAATCTTTCAAGAGTTCTCACTCAGAATCGAAGCCGGGAAATCGACAGCATTAGTTGGCCAAAGTGGGTCAGGCAAGTCAACCATAATAGGTTTAATAGAGAGATTCTATGACCCACTCAGAGGGACGGTGACCATAGACAACAAAGATATAAGGTTGTATCAACTCAGATCATTGAGGAAACACATAGCATTGGTTAGCCAAGAGCCCACATTATTCAGTGGGACCATAAGAGATAACATTTCATATGGCGCATCAGCAAAGGTTGATGAAGCAGAGCTCATAGAGGCTGCTAAAGCAGCGAACGCTCATGATTTCATAGCAAGCTTGAAGGACGGGTACGACACGCCGTGTGGGGACAGAGGAGTGCAACTCTCGGGGGGTCAAAAGCAAAGAATCGCAATCGCGAGGGCCATACTGAAGAACCCAACAATTTTGTTGCTGGATGAGGCAACAAGTGCGCTGGATAGCCAGTCGGAGAAGGTGGTGCAAGAAGCGCTAGAGCGCGTGATGGTAGGACGGACGAGCGTAGTGGTGGCTCACAGGTTGAGCACTATACAGAATTGTAACCTAATTACTGTATTGGACAAAGGTAAAGTGGTAGAGAAAGGAACTCACTCATCTTTATTAGCTAAGGGATCCTCCGGAGCTTATTATTCTTTGGTAAGTCTTCAAAGGAGGCCAACTAGCAATGATAACTCAATTCATTAA 3777 0.4752 MDGDLETSMAVARKKKKIGPIRSIFMHADSQDWFFMVLGIIGSVGDGFSTPLVLFVTSSLMNNVGRALSMDDSSTFLHNINKNAVNLLYVACGSFLVCFLEGYCWTRTGERQAARMRARYLKAVLRQEVAYFDLHVTSTSEVITSVSNDSLVIQDALAEKVPNFLMNVSMFIGSYIVAFAMLWRLAIVGFPFVILLVIPGLIYGRTLMGVARKAREEYNQAGSIAEQAISSIRTVYSFVGESKTIAAFSEALQGSVKLGLKQGLAKGLAIGSNGVVFAIWSFMSYYGSTLVMYHGAEGGTVFVVGASIAIGGLGLGAALPNMKYFSDASSAGERIMEVIKRVPAIDSDNMDGEILESVSGEVEFDHVDFAYPSRPDSIILSDFCLKIPAGRTVALVGGSGSGKSTVISLLQRFYDPHGGEIRLDGVAIRKMQLKWLRSTMGLVSQEPALFATSIKENVLFGKEDASMEEVVEAATASNAHSFISQLPQGYDTQVGERGVQMSGGQKQRIAIARAIIKKPRLLLLDEATSALDSESERVVQEALDKAAVGRTTIIIAHRLSTIRNADIIAVVQSGKIMEMGSHDDLIENDNGLYTSLVRLQQTEQSKSKEEVIFTPSSISNRDINNTSSRRLSLVSRSSSANSIAPNPASLVDEDDGHYAIEDQKFPVPSFRRLLALNLPEWKQATLGCISAMLFGAVQPVYAFTMGSMVSVYFLTDHDEIKEKTRIYALCFLGLAVFSLLINISQHYNFAYMGEYLTKRVRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRAALLVQTFSAVIVACTMGLVIAWRLAIVMIAVQPLIIGCFYTRRVLLRSMSNKSIKAQDESSKIAAEAVTNLRTITAFSSQDRILTMLEKAQEGPKQESIRQSWYAGIGLACSQSLMSCTWALDFWYGGKLISHGYISSKSLFETFMILVSTGRVIADAGSMTSDLAKGADSVGSVFAVLDKYTKIEPEDPDGYKPDKIIGRIELRDVHFAYPARPDVTIFQEFSLRIEAGKSTALVGQSGSGKSTIIGLIERFYDPLRGTVTIDNKDIRLYQLRSLRKHIALVSQEPTLFSGTIRDNISYGASAKVDEAELIEAAKAANAHDFIASLKDGYDTPCGDRGVQLSGGQKQRIAIARAILKNPTILLLDEATSALDSQSEKVVQEALERVMVGRTSVVVAHRLSTIQNCNLITVLDKGKVVEKGTHSSLLAKGSSGAYYSLVSLQRRPTSNDNSIH 1258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1952 1258 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524|GO:0016887
Bisa03g1952 1258 Pfam ABC transporter transmembrane region 36 306 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Bisa03g1952 1258 Pfam ABC transporter transmembrane region 686 954 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Bisa03g1952 1258 CDD ABC_MTABC3_MDL1_MDL2 1007 1247 - -
Bisa03g1952 1258 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 686 972 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Bisa03g1952 1258 FunFam ABC transporter B family member 1 23 361 - -
Bisa03g1952 1258 FunFam Putative ABC transporter B family member 8 650 995 - -
Bisa03g1952 1258 CDD ABC_6TM_Pgp_ABCB1_D2_like 674 990 - -
Bisa03g1952 1258 Pfam ABC transporter 1026 1175 IPR003439 GO:0005524
Bisa03g1952 1258 SUPERFAMILY ABC transporter transmembrane region 666 992 IPR036640 GO:0005524|GO:0016020
Bisa03g1952 1258 Gene3D ABC transporter type 1, transmembrane domain 649 995 IPR036640 GO:0005524|GO:0016020
Bisa03g1952 1258 FunFam ABC transporter B family member 4 997 1253 - -
Bisa03g1952 1258 SUPERFAMILY ABC transporter transmembrane region 30 346 IPR036640 GO:0005524|GO:0016020
Bisa03g1952 1258 Pfam ABC transporter 381 529 IPR003439 GO:0005524
Bisa03g1952 1258 PANTHER ABC TRANSPORTER B FAMILY 12 742 IPR039421 -
Bisa03g1952 1258 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 37 327 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Bisa03g1952 1258 FunFam ABC transporter B family member 1 352 601 - -
Bisa03g1952 1258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 997 1247 IPR027417 -
Bisa03g1952 1258 CDD ABC_MTABC3_MDL1_MDL2 362 600 - -
Bisa03g1952 1258 SMART AAA_5 389 575 IPR003593 GO:0016887
Bisa03g1952 1258 SMART AAA_5 1034 1227 IPR003593 GO:0016887
Bisa03g1952 1258 Gene3D - 997 1256 IPR027417 -
Bisa03g1952 1258 CDD ABC_6TM_Pgp_ABCB1_D1_like 36 335 - -
Bisa03g1952 1258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 600 IPR027417 -
Bisa03g1952 1258 Gene3D ABC transporter type 1, transmembrane domain 24 611 IPR036640 GO:0005524|GO:0016020
Bisa03g1952 1258 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
Bisa03g1952 1258 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1007 1244 IPR003439 GO:0005524
Bisa03g1952 1258 ProSitePatterns ABC transporters family signature. 1147 1161 IPR017871 GO:0005524|GO:0016887
Bisa03g1952 1258 Gene3D - 352 601 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1952 Bisa-ChrBisa03 27258219 27265372 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g1952 21 1248 Calmodulin-binding Proteins AT2G36910 44.891 0.0 1070