Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1950 ATGAAGAGAACTAGGGATGATGTTTATGCTGCTTCTGGCTCTCAATTTAAGCGAGCCTTTTGCACCTCACGAGGGGATTCCTATGGCCAATCCCAAGTCCCTGGAGGAGGAGGAGGAGATGGTGCTGGTAATTGTGGAGGGGGAGGAGGATCTACTTTGCAGAAATTGACTACTACTGATGCCTTATCTTATCTAAAGGAAGTAAAAGACATGTTTCAGAACCAAAGAGAAAAATATGACATGTTCCTTGAGGTCATGAAAGATTTCAAGGCTCAAAGGACTGACACTGCTGGTGTCATAGCAAGGGTGAAGGAACTATTCAAAGGGCACAACAATTTGATTTTTGGATTTAACACCTTCTTGCCAAAAGGATATGAGATAAAACTTGATGAGGATGATGCTCCTCCAAAGAAAACAGTTGAATTTGAAGAAGCCATTAGTTTTGTGAACAAGATAAAGGTTTTGCTTCCACAGAAACGATTTCAAAATGATGAGCATGTTTACAAATCATTCTTGGACATTTTGAATATGTACCGTAAAGAAAGCAAGGACATTAATGAGGTCTATAAGGAGGTTGCTGCTCTTTTTGAGGACCATCCAGATTTGCTTGAGGAGTTCACTAGATTTTTACCGAATAATTCTGTAACACCTGCACAATATGCTGTTCCAAATGGTCGAAATTCATCTCAGTGTTTTAATGAGCGGAGTTCTACAGTAGCCTCAATGCGGCAAATGCAACTGGACAAGGCAATGATTCAACGTCGACGAGATAAGCTTATGACTGCTCATGATCGTGATCTTAGTGTTGATCACCGTGAGCTTGATGATGACAAAGCAACGATTAAATTGCCCAAGGAGCAGAGAAAGCGTGTTGAGAAAGAGAATAGGGATAGGAGAATCCACAACCAGGGTGAGAGAGAACCTGATCTTGATAATATCAGGGATTTAAACTTGCAACGATTTCCTGACAAGAAAATATATGTTAAGAAAGCTGAAGGTTTTGGGTTGACTGCTGACTTTCCTTCTCATGATGACAAAGACACCTTAAAGGGTAAGCCTTCATGCTCTATGTTGGATGGATTGCAGTGCTTGAACACATGA 1101 0.4078 MKRTRDDVYAASGSQFKRAFCTSRGDSYGQSQVPGGGGGDGAGNCGGGGGSTLQKLTTTDALSYLKEVKDMFQNQREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEIKLDEDDAPPKKTVEFEEAISFVNKIKVLLPQKRFQNDEHVYKSFLDILNMYRKESKDINEVYKEVAALFEDHPDLLEEFTRFLPNNSVTPAQYAVPNGRNSSQCFNERSSTVASMRQMQLDKAMIQRRRDKLMTAHDRDLSVDHRELDDDKATIKLPKEQRKRVEKENRDRRIHNQGEREPDLDNIRDLNLQRFPDKKIYVKKAEGFGLTADFPSHDDKDTLKGKPSCSMLDGLQCLNT 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1950 366 ProSiteProfiles PAH domain profile. 138 213 IPR003822 GO:0006355
Bisa03g1950 366 FunFam Paired amphipathic helix SIN3-like protein 137 213 - -
Bisa03g1950 366 Gene3D Paired amphipathic helix 60 122 IPR036600 GO:0006355
Bisa03g1950 366 ProSiteProfiles PAH domain profile. 54 124 IPR003822 GO:0006355
Bisa03g1950 366 Pfam Paired amphipathic helix repeat 77 121 IPR003822 GO:0006355
Bisa03g1950 366 Pfam Paired amphipathic helix repeat 166 210 IPR003822 GO:0006355
Bisa03g1950 366 Gene3D Paired amphipathic helix 137 214 IPR036600 GO:0006355
Bisa03g1950 366 SUPERFAMILY PAH2 domain 135 212 IPR036600 GO:0006355
Bisa03g1950 366 SUPERFAMILY PAH2 domain 51 123 IPR036600 GO:0006355
Bisa03g1950 366 MobiDBLite consensus disorder prediction 287 308 - -
Bisa03g1950 366 PANTHER SIN3B-RELATED 54 244 IPR039774 GO:0003714
Bisa03g1950 366 FunFam Paired amphipathic helix protein Sin3 60 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1950 Bisa-ChrBisa03 27201442 27203530 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g1950 40 135 WRKY Transcription Factor Family AT4G12020 57.732 1.83e-24 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bisa03g1950 PAH 2.3e-15 No_clan