Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1949 ATGTATAACCAAGCATTTAGTTTCTGTGAGAAAGTTAAGGAGAGGTTGGGCAGCTCAGATGACTACCAGGCATTCTTGAAGTGCCTTCATATTTTCAGCAATGGAATAATAAAAAGGCATGATTTACATGATTTGGTCATCAGTTTACTTGGAAAGTATCCTGATCTTATGGATAAATTTAATGATTTCTTGGACAGATGTGAAAATATCGATGGGTTCCTTGCTGGTGTCATAAGTAAAAAGTCATTGTGTGGTGATGGTCAGTTATCCAAATCATCAAAGTTGGATGACAAAGATAAAGACCAGAAGCGTGAGATGGATGGAACTAAAGAGAGGGAAAGATATCAAGAGAAATACATGGGAAAATCCATCCAAGAACTTGACCTCAGCAACTGTGAACATTGTACTCCCAGCTACCGACATCTGCCTGATGATTATCCAATTCCTATGGCTAGTCAGAGATCTGAACTTGGTGCTCAAGTATTGAATGATTACTGGGTATCTGTGACTTCAGGAAGTGAGGATTACTCTTTCAAGCATATGCGCAGGAATCAATATGAAGAAAGCTTGTTCAGATGTGAAGATGACCGATTTGAGCTGGACATGTTATTAGAGTCTGTGAGCTCAGCAGCTAAACTCACCGAAGAATTATATAATAGCATTATTGAAAACAAGATCAATCTGGATGGTCCAATCCGTCTTGAAGAACACTTTAGTGTTCTAAATTTAAGGTGCATTGAACGTCTATATGGTGACCATGGTCTTGATGCAATGGAGACATTACGAAAAAATCCAACTGTTGCTCTGCCTGTGATTCTGACTCGTTTGAAACAGAAACAAGAGGAGTGGAGTAGGTGTCATTCAGATTTCAACAAGGTTTGGGCTGAAATTTATGCTAAAAACCACTACAGATCACTTGATCATCGTAGCTTCTATTTCAAGCAACAAGATTCGAAGAACTTGAACCCAAAATCTTTGGTGACTGAGATCAAAGAAATCAAAGAGAAGCAGCAGAAACAGGATGATGTTCTTCAGGCCATTGCTGCTGGAAATAAACAGCCTCTAATTCCACACCTGGAATTCGAATATTCAGACATTGGGATTCATGAAGACCTATATAAACTTGTTCAATATTCTTGTGAAGAGGTCTTCGCAAGCAAGGAGTTGCTAAATAAAATTTTGAGACTTTGGACTACCTTCTTGGAGCCAATGCTTGGTGTTCCTTCACGATCTCATGAGGCAGTAGATGTAGCGCCTGTTGGAGACTCATTGTTAATGAATTCTAGGCAACCAAAATCTGATAATTATGAAGCTGATGGTAGAATAACTGAAGTAAAGATTGTTCATCAGACTTGTTTAGCAGCCAATGATAAAGAAAATGGATGCATTGACACTGATCATGTTTGTAGAGATGATTCTCTAATGAATAAAGGGCAGAAAAATGTAGATAGTAGTGACAAAATTTCTGGGTTTAGTAAACAATTTGTCTCTGATGAAGAAAGAGCCGACTACAATGCATCATCAATTGCAGTCAGAGGAGAAAATAGTGTGAGCAGAACCAGCTTTGAGATGATCCCAGGTTGCGTTCATTCCGTATCCCGTCCTGCTGGCACAGTAAGTGATGATGACTCTGTTGGCAAGTCTCAGAGTGGGGATGCATCTTTGGTGGAGCGACGTGACATTGCAACTCTGGTTCCTTTGGCCAATGGAATGATAATTGGAAGCAGTAACCAAGGAGGATTTGCTCGGCCTTGCAAAATCGAAAAGGAAGAGGGTGAATTATCACCCACACCCAATGTTGATTCTCAAGAGGATAACTGTGTTGGCTATGGAGATGCCAATGTGCAGGCAAAACCCCGGTCAAAACTTGATCTTGAAAGAAGTAAATTTCGATCCAGAAATGGAGAGGGAGAACGCTGTCTGGAGGCTGGGCTTCGTAATGGAGCAGATGCTGATGATGAGGACATTGAAAATGCTTCTGAAGCTGGTGTAGATGTCTCACAAAGTGAGTCCGCTGGCGATGAATGCTCCCAGGAAGAGCATGAGGGCGAGGAAGATATAGAACATGATGATATTGATGGTAAAGCTGAAAGTGAAGGTGAAGCTGGGGGGATGTGTAATGGCCGATCTGCTGGAGGAGATGGGTTATTATTACCTTTGTCAGAAAGGTCCCTCTTACCCGTGAAGCCTCTCACAAAGCATGTATCAGCAGATTCACTTGTTGAAGAAAGAAAAGATTCCAGGGTTTTTTATGGAAATGATGATTTCTATGTGCTTTTTAGGCTTCATCAAATTCTTTACGAAAGGATCTTATCAGCTAAAACAAATTCAATGAGTGCTGAAGCAAAGTGGAGGATTGCAAAGGATGCTAATTCTCTAGATCCTTATTCAAGATTTATGAATGCACTGTACAACTTGCTTGATGGGTCTGCTGACAATGCAAAGTTTGAAGACGAATGCCGAGCAATTATTGGGAACCAGTCATACATGTTATTCACCTTGGACAAGTTGATATATAAATTGGTTAGACAACTTCAAGCTGTTGCAACTGATGAGATAGACAATAAGCTTCTCCAATTGTTTGAGTATGAAAAGTCCCGGAAACCAGGGAGATTAACCAATTCAGTATATCATGCAAATGCACGTGTCATCCTTCATGAGGAGAATATATATCATTTTGACTGTTCCTCTAACCCCTCCAAACTATCCATACAGCTGATGGACAATATGACCGAAAAGCCAGAGGTGTTTGCTGTTTCTATTGATCCAAATTTTGCCGTTTATCTTTACAATGATTATCTGTCAGTCTTTCCTGACAAAAAGGAACCCCATGGCTTTATACTGCAAAGAAACAAGCGCAAACATAACGATTTGGATGACCTTTCAGCCATGGAAGGTGTAAAAGTTGTTAATGGATTGGAATGTAAGATAGCTTGCAACTCATCAAAGATTTCATATGTTCTGGATACAGAAGATCTCTTCTTTCGTCCCAGAAAGAACCGGAAAACGTCATTGGGAACAGCATCTTCGAAGCATTATGGGGCTAAAGTTGAAAGATTCCACAGAATCTTATCAGGCTCGAAATAA 3087 0.4017 MYNQAFSFCEKVKERLGSSDDYQAFLKCLHIFSNGIIKRHDLHDLVISLLGKYPDLMDKFNDFLDRCENIDGFLAGVISKKSLCGDGQLSKSSKLDDKDKDQKREMDGTKERERYQEKYMGKSIQELDLSNCEHCTPSYRHLPDDYPIPMASQRSELGAQVLNDYWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKLTEELYNSIIENKINLDGPIRLEEHFSVLNLRCIERLYGDHGLDAMETLRKNPTVALPVILTRLKQKQEEWSRCHSDFNKVWAEIYAKNHYRSLDHRSFYFKQQDSKNLNPKSLVTEIKEIKEKQQKQDDVLQAIAAGNKQPLIPHLEFEYSDIGIHEDLYKLVQYSCEEVFASKELLNKILRLWTTFLEPMLGVPSRSHEAVDVAPVGDSLLMNSRQPKSDNYEADGRITEVKIVHQTCLAANDKENGCIDTDHVCRDDSLMNKGQKNVDSSDKISGFSKQFVSDEERADYNASSIAVRGENSVSRTSFEMIPGCVHSVSRPAGTVSDDDSVGKSQSGDASLVERRDIATLVPLANGMIIGSSNQGGFARPCKIEKEEGELSPTPNVDSQEDNCVGYGDANVQAKPRSKLDLERSKFRSRNGEGERCLEAGLRNGADADDEDIENASEAGVDVSQSESAGDECSQEEHEGEEDIEHDDIDGKAESEGEAGGMCNGRSAGGDGLLLPLSERSLLPVKPLTKHVSADSLVEERKDSRVFYGNDDFYVLFRLHQILYERILSAKTNSMSAEAKWRIAKDANSLDPYSRFMNALYNLLDGSADNAKFEDECRAIIGNQSYMLFTLDKLIYKLVRQLQAVATDEIDNKLLQLFEYEKSRKPGRLTNSVYHANARVILHEENIYHFDCSSNPSKLSIQLMDNMTEKPEVFAVSIDPNFAVYLYNDYLSVFPDKKEPHGFILQRNKRKHNDLDDLSAMEGVKVVNGLECKIACNSSKISYVLDTEDLFFRPRKNRKTSLGTASSKHYGAKVERFHRILSGSK 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1949 1028 FunFam Paired amphipathic helix protein SIN3 1 69 - -
Bisa03g1949 1028 MobiDBLite consensus disorder prediction 591 636 - -
Bisa03g1949 1028 MobiDBLite consensus disorder prediction 87 112 - -
Bisa03g1949 1028 SMART hdac_interact2seq4b 131 231 IPR013194 -
Bisa03g1949 1028 MobiDBLite consensus disorder prediction 533 553 - -
Bisa03g1949 1028 Pfam Paired amphipathic helix repeat 20 64 IPR003822 GO:0006355
Bisa03g1949 1028 PANTHER SIN3B-RELATED 2 891 IPR039774 GO:0003714
Bisa03g1949 1028 Gene3D Paired amphipathic helix 1 69 IPR036600 GO:0006355
Bisa03g1949 1028 MobiDBLite consensus disorder prediction 91 112 - -
Bisa03g1949 1028 ProSiteProfiles PAH domain profile. 1 67 IPR003822 GO:0006355
Bisa03g1949 1028 MobiDBLite consensus disorder prediction 619 636 - -
Bisa03g1949 1028 MobiDBLite consensus disorder prediction 677 692 - -
Bisa03g1949 1028 Pfam C-terminal domain of Sin3a protein 750 994 IPR031693 -
Bisa03g1949 1028 MobiDBLite consensus disorder prediction 659 708 - -
Bisa03g1949 1028 Pfam Sin3 family co-repressor 134 224 IPR013194 -
Bisa03g1949 1028 SUPERFAMILY PAH2 domain 2 67 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1949 Bisa-ChrBisa03 27185866 27196520 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bisa03g1949 Sin3a_C 4.2e-56 No_clan