LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa03g1947	ATGTCTTCGTCTGTTCCTCATGAATCTGAGTCCACGCCACAGATCTATAGTAGAAAAGACAAGTCTCTTGGATTACTGTGCTCCAACTTCTTGAAGCTGTATAATCGCGAAGGTATTGGGACGATTGGACTTGACCATGCTGCTGCCCGACTAGGAGTACAGCGTCGCCGCATGTACGATGTAGTCAACATATTGGAGAGTGTTGGAATTGTGGCAAGAAAAGCGAAGAACCAATACTTATGGAAAGGCTTCAGAGAAATTCCCCGAGCTTTGAACGAGCTTAAGAAAGAGGGTCTGAGGGAAAAATCCGATGCGGCCTACTGCAGTTCAGCCGAAGCGTTGAAGAGCAAAGAAAATGGTGGTTCTGAAACTGATAGCGAGGACAATCCCTTGGTATCATCCAAAACTGACGGCTGCCGAAGAGACAAATCTCTAGCACTTCTGACAGAGAATTTTATAAAGCTCTTTCTCTGTTCAGATGTCGACATTATCTTGCTTGAAGATGCCGCAAAGATAATGCCAGGCGATTCCCAGAATTCAACTGCCTTAAGAACAAAAGTCAGACGTCTATATGACATAGCGAACGTCCTTTCCTCTATCAATCTGATTGAGAAGACGAACCATCCGGAAAATAGGAAAACAGCATATAGGTGGTTGGGAAGGAAAGCCAGCGGAGGATCCGATGATACTCTAGATCAGAGTGCATCCAAGAAAAGAGTGTTTGGAACTGAAATTACAAATTCTAGTTTAAAGAGAATTAAAACGGATTCTTTAATGGATTCGCAATTAGATAAAAAGAACCTGATATATAAAAGCCAATATGAGTTGGAAAACGAATACAAGGGTAAAACAATTGAGCACCCAACCAAAAGCAATTCAAAGGCCATAGATTTTGGCCCTTTTGCCCCTATCAAGCTTAGAAGGGAAGATTCAGAGCATAGAAATATGGGACAGGTTCGTGAAACGGAGAACATGAGTTATAAATATCGCCCCGAATATCACAACCAAGGTGATTTTTAG	1020	0.4225	MSSSVPHESESTPQIYSRKDKSLGLLCSNFLKLYNREGIGTIGLDHAAARLGVQRRRMYDVVNILESVGIVARKAKNQYLWKGFREIPRALNELKKEGLREKSDAAYCSSAEALKSKENGGSETDSEDNPLVSSKTDGCRRDKSLALLTENFIKLFLCSDVDIILLEDAAKIMPGDSQNSTALRTKVRRLYDIANVLSSINLIEKTNHPENRKTAYRWLGRKASGGSDDTLDQSASKKRVFGTEITNSSLKRIKTDSLMDSQLDKKNLIYKSQYELENEYKGKTIEHPTKSNSKAIDFGPFAPIKLRREDSEHRNMGQVRETENMSYKYRPEYHNQGDF	339

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa03g1947	339	MobiDBLite	consensus disorder prediction	286	339	-	-
	Bisa03g1947	339	MobiDBLite	consensus disorder prediction	303	339	-	-
	Bisa03g1947	339	Pfam	E2F/DP family winged-helix DNA-binding domain	142	220	IPR003316	GO:0005667\|GO:0006355
	Bisa03g1947	339	Pfam	E2F/DP family winged-helix DNA-binding domain	19	83	IPR003316	GO:0005667\|GO:0006355
	Bisa03g1947	339	MobiDBLite	consensus disorder prediction	116	137	-	-
	Bisa03g1947	339	SUPERFAMILY	"Winged helix" DNA-binding domain	142	221	IPR036390	-
	Bisa03g1947	339	FunFam	E2F transcription factor-like E2FE	134	222	-	-
	Bisa03g1947	339	PANTHER	TRANSCRIPTION FACTOR E2F	9	309	IPR015633	GO:0000978\|GO:0006357
	Bisa03g1947	339	SMART	E2F_TDP_2	140	220	IPR003316	GO:0005667\|GO:0006355
	Bisa03g1947	339	SMART	E2F_TDP_2	18	83	IPR003316	GO:0005667\|GO:0006355
	Bisa03g1947	339	Gene3D	-	135	221	IPR036388	-
	Bisa03g1947	339	Gene3D	-	12	85	IPR036388	-
	Bisa03g1947	339	FunFam	E2F transcription factor 8	13	85	-	-
	Bisa03g1947	339	SUPERFAMILY	"Winged helix" DNA-binding domain	17	81	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa03g1947	Bisa-ChrBisa03	27169282	27171469	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa03g1947	1	336	E2F-DP Transcription Factor Family	AT3G01330	49.568	8.32e-96	286

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	E2F-DP	Bisa03g1947		E2F_TDP	7.2e-18	CL0123