Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1922 ATGGAGTTTCAGGAGACTCTGAAGTTGGTGGTTCACAGGCCCATACACAAGAAATGGATTTCTCATAAACCAACGGAGGCAGAAAAAATTGCCGATGTGGGATCTCCCTGGCGAAAATGGAAGATTTTCTACAAGTCGTCGTCGGCCATCGCTTCGAAACAATCAAAACTCCAAAAGAAACAGCCCCCAGAAGAGTTTCTCTGCCCCATATCAGGGTCTCTCATGGCAGACCCCGTCATCGTCTCATCCGGTCACACCTTCGAGCGAGTCTCTGTTCAAGTCAGTAAAAACTTAAACTTCACACCACTCCTCTCCGATGGCTCCACCCCCGATTTTTCTACAGTCATCCCCAACCTCGCCCTTAAAGCTGCCATTGCCAAATGGTGCCAGAACTCCTCCAAGCCCCCTCCCGAGCCACTTGATGTCAACTCTGCCGAGAAGCTCGTTCACATGCTAATGACGACGACCCAGAAGCCAGAATCAAGTACTCACAGCAAAACAGAGGCACAGAAGGTAGTAGTCACAGAGAAAGAGCTGATTCAAGGGATAAAGGAAAACCCACCTGTGAATTTCAACCACGCAGCGACGGAGGTAACTGGACGACCAACCCACTTCTACTCGAGCTCAGAGGAATCCGTGGGTACCTCTGCTTCAACTCCACCTCTGCAACTCTCGACTCGACCAAGCTGCTATTCTTCTCCTTCGTCCTCAGAAATCGAAGTCGTAACTTCTACCTCGCCCGAAGAAGAAGAAATCATGGCGAAACTGAAAAGCCCACACGTGTTCGAGATCGAAGAGGCAGTGATTTCCCTGAGAAAGCTCACGAAAACCAGAGAAGACATTAGAGCACATCTCTGCAGTCCTCGGCTACTCTCCGCCTTACGATCCTTAATCGTCTCGAAATACACCAACATTCAGGTGAACGCCGTGGCGGCAGTGGTGAATCTCTCATTGGAGAAGGTAAACAAAGTGAAGATCGTACGGTCCGGAATCGTCCCTCCGTTGATTGACGTGCTGAAGGGGGGATCCCCTGAGGCGCAGGAACACGCTTGCGGTGCTCTCTTCAGCTTGGCCCTAAACGACGACAACAAGACTGCTATCGGCGTGCTCGGCGCTCTGCCGCCGCTGCTCCACTTGCTCCGAACCGAGAGCGAGCGAACTCGGCACGACTCGGCTCTAGCACTGTACCACCTCTCGCTGGTACAGAGCAACCGGACCAAGCTGGTGAAACTCGGGTCGGTTCCGGTTCTGATGGGCATGGTGAACTCGGGTCAGATGATGAATCGGGTGTTGCTGATACTGTGCAGCCTGGCGTCGTGTGGGGATGGGCGGGCGGCTATGATGGACTCCGGCGCAGTAGAGTGCTTGGTGGGGATGTTGAACGGGAACGAGTCGGGTTTCGGGTCGACCCGGGAGAGTTGCGTGGCGGTTCTGTATGCGCTGAGTCACGGTGGGTTGAGGTTTAAGGCGGTGGCGAAGGCGGCTGGGGCGATGGAGGTTTTGAGGAAGGTGGAGAAGATGGGAAGCGAGAGGGCGAAGGAGAAGGTGAGGAGGATACAGGAGATGATGAGAGTGAAGGAGGAGGAGGAAGAGGATGTGGATTGGGAGGAGCTTCTCGATTCCGGGTTCGGTAGTCGGAATCGGGTCCGACTTGGAAGTGGGTTGGGCGAGTCTGGTGCTAACTCGTCCGAGTTTTGA 1698 0.54 MEFQETLKLVVHRPIHKKWISHKPTEAEKIADVGSPWRKWKIFYKSSSAIASKQSKLQKKQPPEEFLCPISGSLMADPVIVSSGHTFERVSVQVSKNLNFTPLLSDGSTPDFSTVIPNLALKAAIAKWCQNSSKPPPEPLDVNSAEKLVHMLMTTTQKPESSTHSKTEAQKVVVTEKELIQGIKENPPVNFNHAATEVTGRPTHFYSSSEESVGTSASTPPLQLSTRPSCYSSPSSSEIEVVTSTSPEEEEIMAKLKSPHVFEIEEAVISLRKLTKTREDIRAHLCSPRLLSALRSLIVSKYTNIQVNAVAAVVNLSLEKVNKVKIVRSGIVPPLIDVLKGGSPEAQEHACGALFSLALNDDNKTAIGVLGALPPLLHLLRTESERTRHDSALALYHLSLVQSNRTKLVKLGSVPVLMGMVNSGQMMNRVLLILCSLASCGDGRAAMMDSGAVECLVGMLNGNESGFGSTRESCVAVLYALSHGGLRFKAVAKAAGAMEVLRKVEKMGSERAKEKVRRIQEMMRVKEEEEEDVDWEELLDSGFGSRNRVRLGSGLGESGANSSEF 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1922 565 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Bisa03g1922 565 Pfam Armadillo/beta-catenin-like repeat 322 358 IPR000225 GO:0005515
Bisa03g1922 565 MobiDBLite consensus disorder prediction 205 238 - -
Bisa03g1922 565 FunFam RING-type E3 ubiquitin transferase 247 523 - -
Bisa03g1922 565 MobiDBLite consensus disorder prediction 545 565 - -
Bisa03g1922 565 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 137 IPR013083 -
Bisa03g1922 565 FunFam RING-type E3 ubiquitin transferase 43 135 - -
Bisa03g1922 565 ProSiteProfiles U-box domain profile. 61 135 IPR003613 GO:0004842|GO:0016567
Bisa03g1922 565 SMART arm_5 360 400 IPR000225 GO:0005515
Bisa03g1922 565 SMART arm_5 319 359 IPR000225 GO:0005515
Bisa03g1922 565 SMART arm_5 440 483 IPR000225 GO:0005515
Bisa03g1922 565 SMART arm_5 278 318 IPR000225 GO:0005515
Bisa03g1922 565 SUPERFAMILY ARM repeat 253 508 IPR016024 -
Bisa03g1922 565 SMART Ubox_2 65 128 IPR003613 GO:0004842|GO:0016567
Bisa03g1922 565 SUPERFAMILY RING/U-box 52 135 - -
Bisa03g1922 565 Gene3D - 248 524 IPR011989 -
Bisa03g1922 565 Pfam U-box domain 63 132 IPR003613 GO:0004842|GO:0016567
Bisa03g1922 565 PANTHER U BOX DOMAIN-CONTAINING 53 524 - -
Bisa03g1922 565 Coils Coil 509 532 - -
Bisa03g1922 565 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 330 367 IPR000225 GO:0005515
Bisa03g1922 565 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 371 413 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1922 Bisa-ChrBisa03 26787126 26788823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g1922 59 565 U-box Gene Family AT5G40140 60.583 0.0 570