Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1910 ATGGGAGTGAAGGGTCTCTGGGAACTACTTGCTCCCGTTGGTCGCCGGGTCTCTGTCGAGACCCTCGCCGGGAAGAAGCTCGCTATTGATGCCAGCATATGGATGGTTCAGTTTATGAAGGCGATGCGAGACGAGAAGGGAGAAATGGTTCGCAATGCCCATTTGCTCGGCTTCTTTCGTCGAATTTGCAAGCTCTTGTTCCTGCGGACCAAGCCTGTTTTCGTCTTCGATGGCGGCACCCCGGCTCTGAAGAGACGGACTGTGATTGCACGTCGGAGGCAGCGGGAAAATGCTCAGGCCAAAGTTCGAAAGACTGCCGAGAAATTGCTTCTCAATCATTTAAAGGCATTGAAGTTGAAAGAACTGGCAAATGATATTAAGAACCAGAGGTTGAAGCAGAATACTGATTCTAAGGGTCAGAAAAAATCAGATCCAATGGACTCGGTTGGTTGTGATTTAGGAAGAAATAATATAAAAGAGCTAGATAAAGTATCTGGAAGTAAATTTGCAGCTGAGCTGGACAAAAATTTATCCCAGACTATGGCATCGACAGGCCACAATCAAGAGGAACTTGATGCAATGTTGGCAGCATCTATTGTTGCAGAGGAAGATGGTTTATTAGCCAGCAAAGTGGCATCTGCTGCAGATAATCTTTCTGAGGAGGAGGGTGATATAGACGTCGAAATGGTATTGCCAGCATTAGATGCTGAAGTTGATCTATCTGTGTTAGCTGCTTTGCCGCAGTCAATGCAACAAGATATTCTCTTTCAGCTTAAAGGGAAAAAGCCAGAAGGACTGCTGAGGGATTCTAACATCCAGAAACAATATGAGGTTAATGAGAAGGGCAAGGGTAAAGGGATTCTGCTGCACAAAATTGATTCAATAGGATGTAGCTCAAGAAGTAATGATATGATATCAAGCAAACATGATCAGGAAAAAGTTGATGAAATGTTGGCCGCATCTATCATGGCAGAGCAAAATGAAAAGTTAGTAAATAATGCATCAACATCTGTTGGGGCTTTCAACTCCGAGGCTGAGGATGATATTTATGAAGAGGAAGAAGAAGAAGAGATGATCCTGCCAGCAATGCATGGTAAGGTTGATCCAGCTGTTCTTGCCTCGTTGCCTCCATCAATGCAACTCAACCTTCTTGTTCAGATGAGAGAGCGACTTATTGCAGAAAACAGACAGAAGTATCAGAAAGTCAAGAAGTGCTTCAGTCTTCATCATTGGCATGAGACTGCTGACCCCAAACGGGTGGCAGAATTGGATCCTGCAAAATTCTCGGAGCTGCAAATACAGGCTTACCTTAAAACTGTTGCTTTTCGCCGGGAGATAGATGAAGTGCAGAAAACTGCTGCAGGGGGAGGAGTAGGTGGTGTACAGACTTCACGTATTGCATCTGAAGCCGACAGAGAATACATTTTTTCAACATCTTTTGCTGGTGATAAACAAGAACTTGCCTCTACCAGATTAGAGAAAAATAAAGATACACAAAGGAAGACACCGGGAAACCATCCTTCAGAGGGTTTTTTGAATAGTACTGGGCCTGCCAATGATTCTAGTACTTCAAGTGGATTGGTTTGCAATGAACCTGGAGGCACTTCTGATGAGAGTATCCAGACATATCTGGATGAGAGGGGCCGTTTTCGAGTTAGTAGACTTAGAGCTCTGGGGATCCGTATGACCCGTGATATACAAAGGAATTTGGATTTGATGAGGGAGATCGAGCAGGAAAGAACTAATGCAAAGAAGGCTGCAAATGATAACACAGTTCTTTATGGGGAGAAAAGTTTTGTATCAAAAAGTTCTAGCAACCCTCCTGTTGGGATATCAGACAAGACAAATGCTGACTTAGTTGGAGAGAACTTGAGAAATGAGCACTCTGATTTAGCAGGGGATACTTCTATAGAGATATCCTTCATGGATGATGGTGAGAACAAGTTTCTTGATGGTGATGATGATTTATTTGCTAGTTTAGTTGCAGGTAATTCAGCTCCAATTTCTTGTGCTGACAACACCTCATCGAAAGAACAAGTTTCTGATTCAGATTCTGATTGTGATTGGGAAGAGGATATCATTGAAGGTAAGAGTAATGTTTTCTCTGGTGATGTTGAAGTGGACACAAAGCCATCTGTTGCAAAAGATAATCACAGTGACGAAAGTGATGTAGAATGGGAGCAAGGAGTTTGTGGTGGTGCTAATAGCACATTATTATCTGCAGCTGATCCAGGAAAAATAGCATCTCGAGGTCACTTGGAAGAGGAGGCTGATTTACAGGAGGCAATACAGAGAAGTCTTGAGATCGTAGGGGACCAGAAACTCAATTGTACATTTGAGCATTCAGATTCTGGTGAGGTCAAATCAAATTATGCATTAAACCAAGATGACAATTTGGTTGGTTCTGGAGTGAAGGATAATTATGACAATATTGGAGTACTGAATGGAGAGAACAGTATGGGTGGATCCACTTTGCAAAGGAAAGATGGTACTGAACAAAGTGAGTCAGATTATAAAATTACAGATGATAAGTTGGATAACATGGCAAGAAATAACCTACAAACTTCCCACTCTCCTTGGGGACAGTCAGAGTCATCTGTGGCATTTGATTCTAAGATGGCCCCTTGTACAATGGACACGGGATCTCATTCCGAAGATTTTTTGTCCAATGGAAATGAAAGGATGAAGAATGATGTCCATGTGGTTGCAGAGCAATTCTTGGGTACCTTCAACGAAGATAGTAAGGGATCTACCAATTGTAAAATGTCTATCCAGGTTGACTCCGTTCGTGCTTCAGAAGAGGAGAAAAAAAATCAGAATAATGAAGCTGGACCTTTCCTTAATTCATCTCAAATCTCCAAGCCTGTTGCTCCTTTTGTGGAGTTATCCTTGGCAGGATTAACAGAAGACTGCGACACTCAGCCAGTGTTACCTAGAGAGGACAACCATGGAAGCTCCGAGGAAAGGAAGAGTGAGCTTGGGAAAGATGCAATGAAGGCCCCGGGCCATTTTTCTGCAGAAGACCTCAACCCTCAACCAGAGTTGCCTGGAGAGGGCAATAGTGAAAACTTCGAGGAAAGGAAGAGTAACTTTTGCCAAGAAGCAATGAAGGATCCAGATCATTTGTCTGCAGATGCAGTTGAGGTTGATGTGGAGGAAGAAATACGAATCCTTGGTCAAGAGTATATGAACCTAGAAAATGAGCAGAGGAAGCTTGAACGTAATGCAGAATCTGTCAACAGTGAATTGTTCACTGAATGTCAGGAACTATTGCAAATGTTTGGCTTGCCATATATTATCGCTCCAATGGAAGCAGAAGCACAATGTGCTTATTTGGAACTTGCCAAACTGGTGGATGGTGTTGTGACTGATGACTCAGATGTACTTTTATTTGGGGCTCGTAGTGTCTATAAGAATATATTTGATGACCGCAAATATGTAGAGACCTACTTTATGGAGGACATTGAGAAGGAGCTTGGATTGACCAGAGAAAAATTAATGCGCATGGCTCTGCTTCTTGGGAGTGATTACACTGAAGGTGTAAGTGGAATTGGCATTGTAAATGCTATTGAGGTTGTAAATGCGTTCCCTGAAGAAGATGGCCTTCTGAAGTTCCGGCAGTGGGTTGAGTCACCAGATCCCTCCATTTTTGGAATGTTTGATGCAAAAAGTGGATCCAGTGCCAGAAAGAGAGGGTCGAAAGTTGAAGAGAACGTTACTTGCACAAATCGCAGTACAGAAGATACTATAGTAGACCAAAATATTTTGCATACTCAGGAACAAAAGGAGTCATCAGATTACATAGAAGAAATAAAGGAGATTTTTATGAATAAACATAGAAATGTGAGCAAGAATTGGCATATTCCTTCTTCTTTTCCAAGTGAAAGAGTTATATCTGCTTACTCTTGTCCACAAGTGGACAAGTCAACTGATCCCTTCACATGTGGAAAGCCGGATCATCTTGTTCTTCGCAAATTGTGCTGGGAGAAGTTTGGGTGGACTAGCCAGAAAGCAGATGAATTGCTATTGCCTGTTTTAAAGGAATATAACAAAAATGAGACTCAACTGCGGTTGGAAGCCTTTTATACTTTCAATGAAAGATTTGCAAAAATTCGTAGCAAGAGAATTAAGAAAGCCGTGAAAGGAATCATTGGCAATCAGCCTTCAGAGTTGACAGATGGATCTGCTGAGGACTTGTCTCAGAGTAGGAAAAATGAGACAGGAAGTCCTATTGAACTTGGGGTTAACAGATCAGAGACTTCAAAGGGAACAGGAGGAAGTCCTGCTGACATGAAGGGAGTAAATCTTAAACAGTCCAGGAAAAGGAAGAACTCTGGAGATACTGTTGCCAAGACACAGTCAAGGAAAGAGAGAAACTTGAGTAACCCTGCTCCTGGTCCATCTGAGGCAGATGTGCAGACAGGAAAAGAGCCAAGTGATGGCTGGAACGAGAATGGCAGGGGCAGAGGTAGAGGCAGAGGTGTGGGAGTTCGAAGAGGAAGAGGAAGGGAAAGTCTTGATTTTGATTCATACGAAATCAGATCTAGTGATAGTGACAGTGATGAACATGAGCGTAAAGCTCATGATAAGAAGTCCAAAGGACCGCAAGAGGTGCGAAGGTCCAAGCGCACTCGGAAGACAGTCTACTATGCCATGGGGGACATTGAAATTGAAGATACTGATGACTCATTTGATCAGAACAAGAAGACAGACTTGGATGTAGAGCCGATAGATGAAAGATCATCTCATATGCGTGGTGCCTGTGTAGACGATGTCACTGATTTCAGCAGAGATAAAGAAAGTATGGTAAATCTTTCTCCAAAGATGGATTCATCTAGAAATTATCTTGAATCTGGAGGTGGGTTTTGCGCTGATGAAGGTGAAACTAGTCATCCAGGATCCTGCAATTATGATAGCTCTGTAGATGCTGACTACCTTAAAGTGGGAGGCGGATTTTGTGTAGATGACGATGAGAGACCTAGCGACCATACCGAAATTCATGATGACACGACGGCCAAAGTAGATGATAGTGCAGACCTTACACATCTTTCTGGTTTTGTGGCTGAGGCTGACTCTGATAAAATTCGTATAGATCAGTTCAGTTCTGGTAATAAAAGGTCTGGAATTGAACTACAAGATAGAGGGACGGCTCACAAGATTGAGTTAAATCGCGACCATGTAAATAGTAGGAGTAATTATGATCGGTCTCAGTTTGACACCGAGATCTGCATACCAGAGAATGTTCATGGCGATACAGAAAACTCCATGGCAGCATTCAGTGCCATGCCTTCTTTAAGAAAGAAAAAAAGGAAGAGCTAA 5319 0.4264 MGVKGLWELLAPVGRRVSVETLAGKKLAIDASIWMVQFMKAMRDEKGEMVRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKVRKTAEKLLLNHLKALKLKELANDIKNQRLKQNTDSKGQKKSDPMDSVGCDLGRNNIKELDKVSGSKFAAELDKNLSQTMASTGHNQEELDAMLAASIVAEEDGLLASKVASAADNLSEEEGDIDVEMVLPALDAEVDLSVLAALPQSMQQDILFQLKGKKPEGLLRDSNIQKQYEVNEKGKGKGILLHKIDSIGCSSRSNDMISSKHDQEKVDEMLAASIMAEQNEKLVNNASTSVGAFNSEAEDDIYEEEEEEEMILPAMHGKVDPAVLASLPPSMQLNLLVQMRERLIAENRQKYQKVKKCFSLHHWHETADPKRVAELDPAKFSELQIQAYLKTVAFRREIDEVQKTAAGGGVGGVQTSRIASEADREYIFSTSFAGDKQELASTRLEKNKDTQRKTPGNHPSEGFLNSTGPANDSSTSSGLVCNEPGGTSDESIQTYLDERGRFRVSRLRALGIRMTRDIQRNLDLMREIEQERTNAKKAANDNTVLYGEKSFVSKSSSNPPVGISDKTNADLVGENLRNEHSDLAGDTSIEISFMDDGENKFLDGDDDLFASLVAGNSAPISCADNTSSKEQVSDSDSDCDWEEDIIEGKSNVFSGDVEVDTKPSVAKDNHSDESDVEWEQGVCGGANSTLLSAADPGKIASRGHLEEEADLQEAIQRSLEIVGDQKLNCTFEHSDSGEVKSNYALNQDDNLVGSGVKDNYDNIGVLNGENSMGGSTLQRKDGTEQSESDYKITDDKLDNMARNNLQTSHSPWGQSESSVAFDSKMAPCTMDTGSHSEDFLSNGNERMKNDVHVVAEQFLGTFNEDSKGSTNCKMSIQVDSVRASEEEKKNQNNEAGPFLNSSQISKPVAPFVELSLAGLTEDCDTQPVLPREDNHGSSEERKSELGKDAMKAPGHFSAEDLNPQPELPGEGNSENFEERKSNFCQEAMKDPDHLSADAVEVDVEEEIRILGQEYMNLENEQRKLERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELAKLVDGVVTDDSDVLLFGARSVYKNIFDDRKYVETYFMEDIEKELGLTREKLMRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLLKFRQWVESPDPSIFGMFDAKSGSSARKRGSKVEENVTCTNRSTEDTIVDQNILHTQEQKESSDYIEEIKEIFMNKHRNVSKNWHIPSSFPSERVISAYSCPQVDKSTDPFTCGKPDHLVLRKLCWEKFGWTSQKADELLLPVLKEYNKNETQLRLEAFYTFNERFAKIRSKRIKKAVKGIIGNQPSELTDGSAEDLSQSRKNETGSPIELGVNRSETSKGTGGSPADMKGVNLKQSRKRKNSGDTVAKTQSRKERNLSNPAPGPSEADVQTGKEPSDGWNENGRGRGRGRGVGVRRGRGRESLDFDSYEIRSSDSDSDEHERKAHDKKSKGPQEVRRSKRTRKTVYYAMGDIEIEDTDDSFDQNKKTDLDVEPIDERSSHMRGACVDDVTDFSRDKESMVNLSPKMDSSRNYLESGGGFCADEGETSHPGSCNYDSSVDADYLKVGGGFCVDDDERPSDHTEIHDDTTAKVDDSADLTHLSGFVAEADSDKIRIDQFSSGNKRSGIELQDRGTAHKIELNRDHVNSRSNYDRSQFDTEICIPENVHGDTENSMAAFSAMPSLRKKKRKS 1772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1910 1772 MobiDBLite consensus disorder prediction 1497 1545 - -
Bisa03g1910 1772 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Bisa03g1910 1772 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Bisa03g1910 1772 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Bisa03g1910 1772 FunFam DNA repair protein UVH3 1041 1160 - -
Bisa03g1910 1772 Coils Coil 569 589 - -
Bisa03g1910 1772 Gene3D - 1 141 - -
Bisa03g1910 1772 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Bisa03g1910 1772 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Bisa03g1910 1772 MobiDBLite consensus disorder prediction 487 503 - -
Bisa03g1910 1772 MobiDBLite consensus disorder prediction 1435 1454 - -
Bisa03g1910 1772 MobiDBLite consensus disorder prediction 971 1026 - -
Bisa03g1910 1772 MobiDBLite consensus disorder prediction 504 539 - -
Bisa03g1910 1772 SMART xpgineu 1092 1161 IPR006086 GO:0004518
Bisa03g1910 1772 MobiDBLite consensus disorder prediction 130 150 - -
Bisa03g1910 1772 MobiDBLite consensus disorder prediction 130 145 - -
Bisa03g1910 1772 CDD H3TH_XPG 1164 1308 - -
Bisa03g1910 1772 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Bisa03g1910 1772 MobiDBLite consensus disorder prediction 486 539 - -
Bisa03g1910 1772 Gene3D - 1022 1160 - -
Bisa03g1910 1772 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Bisa03g1910 1772 CDD PIN_XPG_RAD2 2 92 - -
Bisa03g1910 1772 FunFam DNA repair protein UVH3 1161 1218 - -
Bisa03g1910 1772 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 259 - -
Bisa03g1910 1772 SMART xpgn3 1 98 IPR006085 GO:0004518
Bisa03g1910 1772 Gene3D - 1161 1277 - -
Bisa03g1910 1772 ProSitePatterns XPG protein signature 2. 1095 1109 IPR019974 GO:0016788
Bisa03g1910 1772 SMART HhH_4 1163 1196 IPR008918 GO:0003677|GO:0003824
Bisa03g1910 1772 SUPERFAMILY PIN domain-like 2 1176 IPR029060 -
Bisa03g1910 1772 Pfam Ubiquitin binding region 367 390 IPR025527 -
Bisa03g1910 1772 Pfam Ubiquitin binding region 233 257 IPR025527 -
Bisa03g1910 1772 FunFam DNA repair protein UVH3 1 147 - -
Bisa03g1910 1772 Pfam XPG I-region 1095 1176 IPR006086 GO:0004518
Bisa03g1910 1772 MobiDBLite consensus disorder prediction 1388 1425 - -
Bisa03g1910 1772 MobiDBLite consensus disorder prediction 1386 1545 - -
Bisa03g1910 1772 Coils Coil 1048 1082 - -
Bisa03g1910 1772 MobiDBLite consensus disorder prediction 974 997 - -
Bisa03g1910 1772 MobiDBLite consensus disorder prediction 931 950 - -
Bisa03g1910 1772 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1161 1370 IPR036279 -
Bisa03g1910 1772 CDD PIN_XPG_RAD2 1078 1162 - -
Bisa03g1910 1772 MobiDBLite consensus disorder prediction 816 835 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1910 Bisa-ChrBisa03 26598521 26612299 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g1910 1086 1193 Core DNA Replication Machinery Family AT5G26680 36.036 1.98e-12 69.7