Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1895 ATGGGGTCAAGCCGTCTTTTCTTCGGCCCCTCCGCTTGCCGCGGGAACATGCTGTGCCTCGGGAATGCCGATCCCGTCTTCCGAGGAAGATCGATGTTGAGCATGGAGGAAAGCTCAAAGAAGCGACCCTTTTTCAGCTCAACGGAGGAACTGTTCGACGAGGAATATTACGATGAGCAGTTGCCGGAGAAGAAGCGCAGGCTGACTCCCGAGCAGGTGCATCTGCTGGAGAAAAGCTTTGAAGCAGAGAACAAACTGGAGCCGGAACGGAAGACCCAGCTGGCCAAGCAGCTGGGGATGCTGCCAAGGCAGGTGGCTGTGTGGTTTCAGAACCGCAGGGCTCGTTGGAAGACCAAGCAGCTCGAAAGGGATTATGATGTTCTCAAGTCTTCCTACGATTCCCTCCTTGAAAATTATGACTCCATTCTCAAGGACAATGAAAAGCTTAAATCTGAGGTAGTAGCCTTAAATGAGAAGCTTCAATCTAAAGAGGTGTCTGGAGCAGCACTACCAGATGAAAAAGCTGACCCGCTTCTAATGGAAATAGCCCAAACGTCAGCCCCTGCATTTAACATGAAGGCAGAGGACCGTCTGAGCAGTGGAAGTGGTGGAAGTGCAGTGGTTGACGAAGATAGTCCACGGCTTCTTGTGGATAGTGTTGATTCATACTTTCCAACTGAGAACTACGGGGGATGCATAGCCGGAGTCGATGGGATTCCACCGGAGGAGGATGACGGCAGCGATGATGGCCGGAGTTATTTCCCCAATGTGTTTGTGAACCCTGAACCTGAGCACCAAAGCCATGAGGATGCAGAGGCATTCGACTGGTGGGTGAAAGTAATGGTGAAAGATGTCATGTAA 861 0.5134 MGSSRLFFGPSACRGNMLCLGNADPVFRGRSMLSMEESSKKRPFFSSTEELFDEEYYDEQLPEKKRRLTPEQVHLLEKSFEAENKLEPERKTQLAKQLGMLPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDSLLENYDSILKDNEKLKSEVVALNEKLQSKEVSGAALPDEKADPLLMEIAQTSAPAFNMKAEDRLSSGSGGSAVVDEDSPRLLVDSVDSYFPTENYGGCIAGVDGIPPEEDDGSDDGRSYFPNVFVNPEPEHQSHEDAEAFDWWVKVMVKDVM 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1895 286 Gene3D - 58 125 - -
Bisa03g1895 286 CDD homeodomain 64 120 IPR001356 GO:0003677
Bisa03g1895 286 Coils Coil 118 166 - -
Bisa03g1895 286 FunFam Homeobox-leucine zipper protein HAT5 57 121 - -
Bisa03g1895 286 SMART HOX_1 62 123 IPR001356 GO:0003677
Bisa03g1895 286 SUPERFAMILY Homeodomain-like 64 130 IPR009057 -
Bisa03g1895 286 MobiDBLite consensus disorder prediction 234 266 - -
Bisa03g1895 286 Pfam Homeobox associated leucine zipper 119 161 IPR003106 GO:0006355|GO:0043565
Bisa03g1895 286 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Bisa03g1895 286 Pfam Homeodomain 64 117 IPR001356 GO:0003677
Bisa03g1895 286 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Bisa03g1895 286 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 49 191 IPR045224 GO:0003700
Bisa03g1895 286 PRINTS Lambda-repressor HTH signature 90 99 IPR000047 GO:0003677
Bisa03g1895 286 PRINTS Lambda-repressor HTH signature 99 115 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1895 Bisa-ChrBisa03 26411315 26413486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g1895 1 277 Homeobox Transcription Factor Family AT3G01470 58.392 3.93e-98 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bisa03g1895 Homeodomain 1.8e-17 CL0123