Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1851 ATGGCTGCTACTGCAACTGCCTCTTCAGTGGGTCCAAGATATGCACCGCCGGACCCAACTCTACCAAAACCATGGCGGGGACTTGTTGACGGTAAGACTGGGTATCTTTACTTCTGGAATCCTGAGACTAATGTTACCCAATATGAGAGACCTACGAGCTCAGCTCCCCCGCCAAAGTCTTCTTCAGTGCCTAGTTCTTCTGTTCAGGTTCAACAATCATCTCAAGGGCTACATCGTGGCCGCAGTCCTGATTTAAATGATAGGTACGGTAGAAGCAGCACTGGTGGATCAAACTTTGAAGCTGGATCACGGAATCATCAGACTCCAAAAGATGGGAGTTTTAGTTCTTATAATGTTCCAAATGGGATACACGTGGCTGGAAATGTCAGTTCTTCTATCAAAGTTCATGGAGTATCAGATGCAGAAGCTGGATTGGCACCAGAGTCTTACCGTCGCCGCCATGAAATAACTGTTTCTGGAGATAATGTTCCTTCACCTTTTACATCATTTAGCTGTACTGGCTTTCCATCTGAGATTCTTAGAGAGGTACACAATGCTGGGTTCTCTGCCCCAACACCAATTCAGGCACAGTCTTGGCCCATTGCTCTTCAAAGTAGGGATATAGTTGCCATTGCTAAAACAGGTTCTGGGAAAACCTTGGGATATTTAATCCCAGGATTTATCCACCTCAAACGTGTTGGTAATGATTCCAGATTGGGCCCCACTGTTTTGGTACTGTCACCAACAAGGGAGCTGGCAACACAGATACAAGATGAAGCGGTGAAGTTTGCAAAATCATCCAGAATTTCTTGTGTATGTTTGTATGGAGGAGCACCTAAGGGTCCTCAATTGAGAGATATTGACAGAGGAGCAGATATTGTAGTTGCCACTCCTGGCCGCTTGAATGATATCCTTGAGATGCGGAGAATCAGTCTCCAACAGGTCTCTTACCTAGTGCTAGATGAGGCTGACCGGATGCTGGATATGGGTTTTGAACCTCAAATTAGAAAGGTTGTGAAGGAAGTGCCTGCACGGCGGCAAACCCTCATGTTTACTGCAACATGGCCTAAGGAAGTCAGAAAAATTGCAGCTGATCTACTGGTCAATCCCGTTCAGGTTAACATTGGCAATGTTGATGAGCTTGTTGCTAATAAGTCTATTACTCAGCATATAGAAGTGTTGGCACCATTGGAGAAGCACAGACGACTGGAGCAGATATTGCGGTCACAGGATCCAGGTTCAAAAGTAATTATTTTTTGTTCTACCAAGAAAATGTGCGATCAACTTGCTCGTAATCTTACACGCCAGTTTGGGGCTGCTGCCATACATGGGGATAAATCCCAGTCTGAGAGGGATCATGTATTGAATCAATTTCGAACTGGGAGGTCTCCTGTGCTTGTAGCAACAGATGTTGCAGCTCGAGGATTGGACATCAAAGATATTAGGGTTGTTGTCAACTATGACTTTCCTACTGGAGTGGAGGATTATGTTCATAGGATTGGAAGGACGGGGAGGGCAGGAGCCACTGGCTTGGCTTACACATTTTTTGGAGACCAGGATGCTAAACATGCTTCAGATCTCATCAAAATATTGGAAGGTGCCAATCAGCGAGTCACTCCAGAACTTCGTGATTTGGCGTCACGCGGTGGTGGGATGAGCAAATCCAGACGATGGGGTTCTGGTGTCCGTGGGGGACGTAGTGATTCTGGATATGGAGGAAGGGGTAGTGATTCTGTTTATGGGGGAAGGGGTGGGTTGGGAGCCACTCCTGGTGGCCGAAGTGGAGGCCGTGGATATGACTATGACTCGCAGAGGAATGATCGTGGTTACTATGGACACGACATGGATAACCGAGGGAAATATGATAAACGACGTAGTCGTAGTAGAAGCCCTGAAAGATCAAGTTGGAGTGACCGCAGTAAAAGCTTCAACCGTGATCGCAGCCGTAGCCGTAGTCCTGACAGGCATGATAGGGCTGTGCCACATCAACAATCTCAAGGTTACAGTTTTCACAATGCAATGATGGAGCGTAAAGGGGGCAGTGATCACAACAAAAGCTTTGATGGGGATAGAAGTCGTAGCCCTCTCAAGCATGGTAGTTTTCATCATTCAATGATTGAGCGTGGTCAATCATCTCCCCCATCTAGGCAGGAACAGCAGCGGCGTGTTGCGCCTTACAACAGTTCTTACCGAACGAGTTCACCATCCTCCCCAGGTCAGGGGTGGGGAGGATCTCCTCTAAATAGGTTGGATGATGGAAGATATGGTGGATCTCATTCTTTCTACCATGGAGAAGAGGAGGAAGGCATGATTCCTGAAGAACCTCAAGATGATGCCCTTTATGCGGTTGCGGATTAG 2358 0.4703 MAATATASSVGPRYAPPDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPTSSAPPPKSSSVPSSSVQVQQSSQGLHRGRSPDLNDRYGRSSTGGSNFEAGSRNHQTPKDGSFSSYNVPNGIHVAGNVSSSIKVHGVSDAEAGLAPESYRRRHEITVSGDNVPSPFTSFSCTGFPSEILREVHNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRVGNDSRLGPTVLVLSPTRELATQIQDEAVKFAKSSRISCVCLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLQQVSYLVLDEADRMLDMGFEPQIRKVVKEVPARRQTLMFTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHIEVLAPLEKHRRLEQILRSQDPGSKVIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDHVLNQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQRVTPELRDLASRGGGMSKSRRWGSGVRGGRSDSGYGGRGSDSVYGGRGGLGATPGGRSGGRGYDYDSQRNDRGYYGHDMDNRGKYDKRRSRSRSPERSSWSDRSKSFNRDRSRSRSPDRHDRAVPHQQSQGYSFHNAMMERKGGSDHNKSFDGDRSRSPLKHGSFHHSMIERGQSSPPSRQEQQRRVAPYNSSYRTSSPSSPGQGWGGSPLNRLDDGRYGGSHSFYHGEEEEGMIPEEPQDDALYAVAD 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1851 785 SMART helicmild6 427 507 IPR001650 -
Bisa03g1851 785 ProSitePatterns WW/rsp5/WWP domain signature. 25 51 IPR001202 GO:0005515
Bisa03g1851 785 CDD SF2_C_DEAD 387 516 - -
Bisa03g1851 785 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 199 373 IPR014001 -
Bisa03g1851 785 SMART ultradead3 187 390 IPR014001 -
Bisa03g1851 785 SUPERFAMILY WW domain 13 53 IPR036020 GO:0005515
Bisa03g1851 785 CDD WW 22 52 IPR001202 GO:0005515
Bisa03g1851 785 FunFam probable ATP-dependent RNA helicase DDX17 136 376 - -
Bisa03g1851 785 Gene3D - 378 548 IPR027417 -
Bisa03g1851 785 Gene3D - 11 57 - -
Bisa03g1851 785 Pfam DEAD/DEAH box helicase 192 362 IPR011545 GO:0003676|GO:0005524
Bisa03g1851 785 MobiDBLite consensus disorder prediction 47 117 - -
Bisa03g1851 785 ProSiteProfiles WW/rsp5/WWP domain profile. 19 53 IPR001202 GO:0005515
Bisa03g1851 785 SMART ww_5 20 53 IPR001202 GO:0005515
Bisa03g1851 785 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 135 546 - -
Bisa03g1851 785 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 402 546 IPR001650 -
Bisa03g1851 785 MobiDBLite consensus disorder prediction 676 704 - -
Bisa03g1851 785 Pfam Helicase conserved C-terminal domain 399 507 IPR001650 -
Bisa03g1851 785 MobiDBLite consensus disorder prediction 87 117 - -
Bisa03g1851 785 FunFam ATP-dependent RNA helicase RhlB 377 549 - -
Bisa03g1851 785 MobiDBLite consensus disorder prediction 705 743 - -
Bisa03g1851 785 MobiDBLite consensus disorder prediction 541 785 - -
Bisa03g1851 785 MobiDBLite consensus disorder prediction 600 661 - -
Bisa03g1851 785 Gene3D - 145 377 IPR027417 -
Bisa03g1851 785 MobiDBLite consensus disorder prediction 1 26 - -
Bisa03g1851 785 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 168 196 IPR014014 GO:0003724
Bisa03g1851 785 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 240 523 IPR027417 -
Bisa03g1851 785 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 319 327 IPR000629 -
Bisa03g1851 785 MobiDBLite consensus disorder prediction 47 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1851 Bisa-ChrBisa03 25607434 25611870 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g1851 166 527 Eukaryotic Initiation Factors Gene Family AT3G19760 34.973 5.75e-65 220