Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1844 ATGCCCAGCTGCAAAACCCTAGCAGAGATATATCATTATATTCCCTTTTTCGGCTTCGCCAACACCGTCTCCATCATTCACTGCTCCTTCACCTTGCACTTGCAGATAAGGCAAAGGATGCAGATATTCGTGAAAACCCTAACGGGGAAGACCATAACCCTTGAGGTCGAGTCCTCAGACACCATCGACAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCGCCCGATCAACAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTAGCGGATTACAACATCCAGAAGGAATCCACCCTCCACCTCGTACTCAGGCTTCGCGGTGGCGCCAAGAAACGCAAGAAGAAGACCTACACGAAGCCCAAGAAGATCAAGCACAAGAAGAAGAAGGTGAAGCTCGCGGTTCTTCAGTTTTACAAGGTGGATGATTCTGGAAAAGTTCAGAGGTTGAGGAAGGAGTGCCCTAATGCTGAATGCGGTGCTGGGACTTTCATGGCCAACCATTTTGATCGCCATTACTGTGGCAAGTGCGGATTGACCTATGTTTACCAGAAGGCTGGCGGTGATTAG 588 0.5068 MPSCKTLAEIYHYIPFFGFANTVSIIHCSFTLHLQIRQRMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAGGD 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1844 195 ProSiteProfiles Ubiquitin domain profile. 40 115 IPR000626 GO:0005515
Bisa03g1844 195 SUPERFAMILY Ubiquitin-like 29 116 IPR029071 -
Bisa03g1844 195 Pfam Ribosomal protein S27a 141 186 IPR002906 GO:0003735|GO:0005840|GO:0006412
Bisa03g1844 195 FunFam Ubiquitin-40S ribosomal protein S27a 40 118 - -
Bisa03g1844 195 PRINTS Ubiquitin signature 50 70 IPR019956 -
Bisa03g1844 195 PRINTS Ubiquitin signature 71 91 IPR019956 -
Bisa03g1844 195 PRINTS Ubiquitin signature 92 113 IPR019956 -
Bisa03g1844 195 CDD Ubl_ubiquitin 40 115 - -
Bisa03g1844 195 ProSitePatterns Ubiquitin domain signature. 66 91 IPR019954 -
Bisa03g1844 195 Gene3D - 120 193 IPR038582 -
Bisa03g1844 195 SMART Ribosomal_S27_2 141 186 IPR002906 GO:0003735|GO:0005840|GO:0006412
Bisa03g1844 195 Gene3D - 40 119 - -
Bisa03g1844 195 PANTHER UBIQUITIN 40 128 - -
Bisa03g1844 195 Pfam Ubiquitin family 42 113 IPR000626 GO:0005515
Bisa03g1844 195 SUPERFAMILY Zn-binding ribosomal proteins 139 192 IPR011332 GO:0006412
Bisa03g1844 195 SMART ubq_7 40 111 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1844 Bisa-ChrBisa03 25495108 25495695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g1844 40 193 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 96.104 3.66e-90 259