Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1812 ATGGACTTTCCTAGATACCAATCATCACTCTTCCGCCACATCACGTCAAGAGAACTCAATGGCTATAGAGTTCGAAAACGGGCTTACACGGACGGGATCGCGTCTGACTTCAGCGAGATCGGAGCAATGGCTGTAGAGCACAATGGGGGCGAGACTCCTCCGTTGGCTATCTCATTCTGCAAGACCGCCAAAAATTCCCACATTATTGCTTTGTCGGATGAGGATGGATATGTAAACCTGTTCGATACTCGCCGCAAGTTTTCTTCTTCCTCATCATACCAAGAAAATGCAGAGAAAGCAAAGATTTGCGATTGGGTTGCGCATCATAATGCTGTTTTTGATGTCTGCTGGATTAAGGAAGATACGCAGGTTCTCACAGCTTCTGGTGATCAAACAATGAAGTTATGGGATGTTCAAGAAAAGAAGTGTATAGGAGTGATGATTGGGCACACAGGAAGTGTGAAATCTATGTGTTCTCATCCAACAAATGCAGATATTGTTGTCTCTGGTTCAAGAGATGGATCCTTTTGTCTTTGGGACTTGAGATGCAACTCAGCACCTAAATATAAGCGTGGGGAGCTTTGCATATGTTCAACAGCTGCAGTCAAAGGAGCCCATCTTTCATCTCAAGCAAAACGAGTTAGAAGGGGCAAGGCTGCTTCCATGAGCATTACATCAGTTCTTTATCTCAAAGATCAGGTTTCTGTAGCTACAGCCGGGGCAGTGGATAGTGTTATAAAGTTCTGGGATACCAGAAACTTGAAAAGTTCTGTCATGCAGACATGCCCTCGTCTCCAGACTACAGAAAAGGAAAGGTTACATGGCATATCTAGCATGTCCCAAGATCAAAGTGGAGTAAATCTATCAGCCTCCTGCATGGATAACAGAATATACTTGTATAACTTACTTCAGCTTGAAAAGGGGCCTTTGAAATCTTTTACTGGATGTCGAATAGAATCATTTTTTGTGAAGTCTGCAATTAGTCCTGATGCAACTCACATAGTCAGTGGTTCTAGTGATGGAAATGCCTATGTTTGGCAGGTTAACAAGCCTCAAGATGATCCTATTACTTTGAAAACTCATGATGGGGAAGTTACGGCAGTTGATTGGTGCCACTCTGAGGATGGCAAACTAGCAACTTCCTCTGATGATTTCACAGTCCGGATTTGGAATAATAATAGTTGTTTCTCAAGCACAAAACCTCCAGCTTCCATCCGGAGGAGAATAATGGCAATGCCTAGTGGAGAATGCAGAAGGCTTTTAAAGCAGGATGAAGAACTGTGTTCCAAAACAGGTCCCGAGAGTGCTTTTCTTTCTGAGGAAGCTCCAGCTAAAATTAACCGAGACATGCCAGTTACACCCCCAAAAATGCATAAAACTGAAGACCAAGCGAGCCAGTTTTCATCCGTGTCTTATCTCACTGAGTCATCAGAGAAAACTCCTGAACCTGCTCTGAAGAGCCCTTCTTCTGTTTTGAATCCACCATCCTCTCTAAAGAGAACTATAAGGGATTACTTTGTAGCAGCTTCATGA 1533 0.4338 MDFPRYQSSLFRHITSRELNGYRVRKRAYTDGIASDFSEIGAMAVEHNGGETPPLAISFCKTAKNSHIIALSDEDGYVNLFDTRRKFSSSSSYQENAEKAKICDWVAHHNAVFDVCWIKEDTQVLTASGDQTMKLWDVQEKKCIGVMIGHTGSVKSMCSHPTNADIVVSGSRDGSFCLWDLRCNSAPKYKRGELCICSTAAVKGAHLSSQAKRVRRGKAASMSITSVLYLKDQVSVATAGAVDSVIKFWDTRNLKSSVMQTCPRLQTTEKERLHGISSMSQDQSGVNLSASCMDNRIYLYNLLQLEKGPLKSFTGCRIESFFVKSAISPDATHIVSGSSDGNAYVWQVNKPQDDPITLKTHDGEVTAVDWCHSEDGKLATSSDDFTVRIWNNNSCFSSTKPPASIRRRIMAMPSGECRRLLKQDEELCSKTGPESAFLSEEAPAKINRDMPVTPPKMHKTEDQASQFSSVSYLTESSEKTPEPALKSPSSVLNPPSSLKRTIRDYFVAAS 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1812 510 Gene3D - 189 320 IPR015943 GO:0005515
Bisa03g1812 510 MobiDBLite consensus disorder prediction 451 497 - -
Bisa03g1812 510 PRINTS G protein beta WD-40 repeat signature 167 181 IPR020472 -
Bisa03g1812 510 PRINTS G protein beta WD-40 repeat signature 334 348 IPR020472 -
Bisa03g1812 510 PRINTS G protein beta WD-40 repeat signature 124 138 IPR020472 -
Bisa03g1812 510 ProSiteProfiles Trp-Asp (WD) repeats profile. 326 349 IPR001680 GO:0005515
Bisa03g1812 510 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 8 509 - -
Bisa03g1812 510 SMART WD40_4 98 137 IPR001680 GO:0005515
Bisa03g1812 510 SMART WD40_4 140 180 IPR001680 GO:0005515
Bisa03g1812 510 SMART WD40_4 210 250 IPR001680 GO:0005515
Bisa03g1812 510 SMART WD40_4 36 82 IPR001680 GO:0005515
Bisa03g1812 510 SMART WD40_4 266 301 IPR001680 GO:0005515
Bisa03g1812 510 SMART WD40_4 351 391 IPR001680 GO:0005515
Bisa03g1812 510 SMART WD40_4 306 347 IPR001680 GO:0005515
Bisa03g1812 510 MobiDBLite consensus disorder prediction 459 497 - -
Bisa03g1812 510 ProSiteProfiles Trp-Asp (WD) repeats profile. 147 182 IPR001680 GO:0005515
Bisa03g1812 510 Gene3D - 323 426 IPR015943 GO:0005515
Bisa03g1812 510 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 147 182 - -
Bisa03g1812 510 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 358 391 - -
Bisa03g1812 510 ProSiteProfiles Trp-Asp (WD) repeats profile. 105 146 IPR001680 GO:0005515
Bisa03g1812 510 Pfam WD domain, G-beta repeat 142 180 IPR001680 GO:0005515
Bisa03g1812 510 Pfam WD domain, G-beta repeat 310 346 IPR001680 GO:0005515
Bisa03g1812 510 Pfam WD domain, G-beta repeat 357 391 IPR001680 GO:0005515
Bisa03g1812 510 Pfam WD domain, G-beta repeat 107 137 IPR001680 GO:0005515
Bisa03g1812 510 SUPERFAMILY WD40 repeat-like 54 395 IPR036322 GO:0005515
Bisa03g1812 510 Gene3D - 36 188 IPR015943 GO:0005515
Bisa03g1812 510 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 105 139 - -
Bisa03g1812 510 ProSiteProfiles Trp-Asp (WD) repeats profile. 358 391 IPR001680 GO:0005515
Bisa03g1812 510 ProSitePatterns Trp-Asp (WD) repeats signature. 124 138 IPR019775 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g1812 107 354 U-box Gene Family AT1G04510 24.815 6.65e-09 56.2