Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1800 ATGGAGTCACCCATTAACGACCCTGCTGTTGACGGAGAAACCAACGATGCGAGGCCCTTTGCCCACAGAGACGAAGAAGAGGAGGACAAGTCTCAGCCTCTTACCGGCGATGGAGCGAGTCCTGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACAATTGCTCAATTTGTCAAGCACTTTGGTAAATATGGTGAGATTACGGATTCTGTAATAATGAAGGACCGGAAGACTGGGCAACCTCGTGGTTTTGGTTTCATAACCTATGCAGACCCCTCTGTGGTTGATAAAGTCATCGAGGATACCCATGTTATTAATGGCAAACAAGTGGAAATTAAGCGTACAATACCAAGGGGAGCTGTTGGCTCTAAGGATTTCAGGACGAAGAAAATTTTTGTGGGTGGAATTCCCTCAACCGTGACTGAAGATGAGTTTAGAGACTTCTTTACACGCTATGGGGAGGTCAAAGATAACCAAATAATGCGGGACCATTCTACCAATCGTTCTCGTGGATTTGGGTTTATCACCTTTGACTCTGAGGAAGCTGTTGAAGATCTTATAGCTAAAGGGAACAAGATTGAGTTTGCTGGGACTCAGGTGGAAATCAAGAAAGCTGAGCCAAAGAAGCCAAACCCACCACCGCCACCATCGAAGCGTTATAATAATGACTCAAGATCTTCATTTGGTAGTGGTTATGGTGATGCTTACGATGGATTTGGTGGTGGCTTTGGTGTTGGGGGATACAGGTCAGGTGGGGTATATGGTGGTAGGGGTGGTTCTTATGGTGGCTATGGAGGTGAATTTGGTGGATATGGTGGATATGCTGGTGCCATGGGACCCTACAGAGGAGACCCCTCCTCTCTTGGGTACTCTGGTCGATTTGGAGGTGGGTTTAGCAGAGGTTATGATCTTGGAGGTTATGGTGGACCTAGTGAGAGTTATGGGGGATACAGTGGTATTGGTTCTTCCGGTGGTGCCTACGGCAGCGGGTACGATGCTGGCATAGGGGGTGGATATAGTGGTGCTGGCGGTAGTGCTGGTAGTGCAGGTAACTACTATGGGAGTAGAGGTGGATATGGTGGTGCAGGGGGTAGTCGATATCATCCTTATGGAAGATAG 1122 0.4768 MESPINDPAVDGETNDARPFAHRDEEEEDKSQPLTGDGASPGKIFIGGLARETTIAQFVKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSTVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITFDSEEAVEDLIAKGNKIEFAGTQVEIKKAEPKKPNPPPPPSKRYNNDSRSSFGSGYGDAYDGFGGGFGVGGYRSGGVYGGRGGSYGGYGGEFGGYGGYAGAMGPYRGDPSSLGYSGRFGGGFSRGYDLGGYGGPSESYGGYSGIGSSGGAYGSGYDAGIGGGYSGAGGSAGSAGNYYGSRGGYGGAGGSRYHPYGR 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1800 373 SUPERFAMILY RNA-binding domain, RBD 39 120 IPR035979 GO:0003676
Bisa03g1800 373 MobiDBLite consensus disorder prediction 1 42 - -
Bisa03g1800 373 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 111 IPR000504 GO:0003723
Bisa03g1800 373 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 201 IPR000504 GO:0003723
Bisa03g1800 373 SMART rrm1_1 131 204 IPR000504 GO:0003723
Bisa03g1800 373 SMART rrm1_1 43 114 IPR000504 GO:0003723
Bisa03g1800 373 Gene3D - 42 117 IPR012677 -
Bisa03g1800 373 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 208 IPR000504 GO:0003723
Bisa03g1800 373 MobiDBLite consensus disorder prediction 16 33 - -
Bisa03g1800 373 FunFam Heterogeneous nuclear ribonucleoprotein 1 41 122 - -
Bisa03g1800 373 FunFam Heterogeneous nuclear ribonucleoprotein 1 123 244 - -
Bisa03g1800 373 Gene3D - 118 216 IPR012677 -
Bisa03g1800 373 SUPERFAMILY RNA-binding domain, RBD 119 220 IPR035979 GO:0003676
Bisa03g1800 373 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 118 IPR000504 GO:0003723
Bisa03g1800 373 MobiDBLite consensus disorder prediction 200 227 - -
Bisa03g1800 373 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 24 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1800 Bisa-ChrBisa03 24636735 24640385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g1800 42 209 Eukaryotic Initiation Factors Gene Family AT1G71770 26.966 1.04e-11 64.3